Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s25.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2578.97 26793.14 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2551.03 26502.86 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2215.04 23012.24 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1972.65 20494.03 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1946.80 20225.47 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1798.02 18679.78 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1163.05 12083.02 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Actb ENSMUSG00000029580 783.05 8135.17 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. mt-Nd3 ENSMUSG00000064360 773.27 8033.57 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Rnr2 ENSMUSG00000064339 644.04 6690.99 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. Eef1a1 ENSMUSG00000037742 620.29 6444.24 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. H19 ENSMUSG00000000031 565.81 5878.25 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Co3 ENSMUSG00000064358 523.20 5435.57 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. mt-Nd2 ENSMUSG00000064345 407.24 4230.85 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Hbb-y ENSMUSG00000052187 361.14 3751.91 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Mdk ENSMUSG00000027239 356.95 3708.38 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Igf2 ENSMUSG00000048583 354.85 3686.57 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Gm13340 ENSMUSG00000083563 326.91 3396.30 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Tubb5 ENSMUSG00000001525 317.83 3301.96 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
20. Tubb2b ENSMUSG00000045136 290.59 3018.96 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
21. Cfl1 ENSMUSG00000056201 281.51 2924.63 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Tuba1a ENSMUSG00000072235 260.55 2706.88 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
23. mt-Nd5 ENSMUSG00000064367 238.90 2481.95 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
24. Ubb ENSMUSG00000019505 232.61 2416.60 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Tuba1b ENSMUSG00000023004 230.51 2394.79 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Nedd4 ENSMUSG00000032216 228.42 2373.07 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Tpt1 ENSMUSG00000060126 225.63 2344.09 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Map1b ENSMUSG00000052727 221.43 2300.45 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
29. Npm1 ENSMUSG00000057113 215.85 2242.48 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
30. Eif4g2 ENSMUSG00000005610 192.79 2002.91 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Pkm ENSMUSG00000032294 192.79 2002.91 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Tmsb4x ENSMUSG00000049775 192.79 2002.91 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
33. Ybx1 ENSMUSG00000028639 192.79 2002.91 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
34. Cdkn1c ENSMUSG00000037664 190.00 1973.93 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
35. Rpsa ENSMUSG00000032518 187.21 1944.94 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
36. Rpl4 ENSMUSG00000032399 183.71 1908.58 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Chchd2 ENSMUSG00000070493 176.73 1836.06 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Hmga2 ENSMUSG00000056758 170.44 1770.72 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
39. Hsp90ab1 ENSMUSG00000023944 169.74 1763.44 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Hba-a1 ENSMUSG00000069919 169.04 1756.17 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
41. Hsp90aa1 ENSMUSG00000021270 159.26 1654.57 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Hba-x ENSMUSG00000055609 155.07 1611.04 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
43. Basp1 ENSMUSG00000045763 153.68 1596.59 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
44. Grb10 ENSMUSG00000020176 150.88 1567.50 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Hnrnpc ENSMUSG00000060373 150.88 1567.50 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
46. Atp5g3 ENSMUSG00000018770 148.79 1545.79 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Rpl23 ENSMUSG00000071415 145.29 1509.43 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Pcbp1 ENSMUSG00000051695 136.91 1422.37 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Ywhae ENSMUSG00000020849 132.02 1371.57 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
50. Eef1b2 ENSMUSG00000025967 131.32 1364.29 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Eif5a ENSMUSG00000078812 129.23 1342.58 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
52. Rps20 ENSMUSG00000028234 127.13 1320.76 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Rps26 ENSMUSG00000025362 127.13 1320.76 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Marcks ENSMUSG00000069662 125.74 1306.32 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
55. Rps4x ENSMUSG00000031320 125.04 1299.05 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Fkbp1a ENSMUSG00000032966 124.34 1291.78 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Ywhab ENSMUSG00000018326 122.94 1277.23 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
58. Set ENSMUSG00000054766 120.85 1255.52 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
59. U2af2 ENSMUSG00000030435 120.85 1255.52 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
60. Trim28 ENSMUSG00000005566 118.75 1233.70 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
61. Stmn1 ENSMUSG00000028832 117.35 1219.16 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
62. Stmn2 ENSMUSG00000027500 111.07 1153.92 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
63. Tubb3 ENSMUSG00000062380 108.27 1124.83 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
64. Ran ENSMUSG00000029430 107.57 1117.55 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
65. Rpl18a ENSMUSG00000045128 106.88 1110.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
66. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 105.48 1095.84 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
67. Marcksl1 ENSMUSG00000047945 101.29 1052.31 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
68. Hmgn1 ENSMUSG00000040681 98.49 1023.22 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. Pbx1 ENSMUSG00000052534 98.49 1023.22 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
70. Morf4l2 ENSMUSG00000031422 97.10 1008.78 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
71. Gap43 ENSMUSG00000047261 96.40 1001.51 growth associated protein 43 [Source:MGI Symbol;Acc:MGI:95639]
72. Meg3 ENSMUSG00000021268 96.40 1001.51 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
73. Rpl37 ENSMUSG00000041841 96.40 1001.51 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
74. Ddx5 ENSMUSG00000020719 95.70 994.24 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
75. Myl6 ENSMUSG00000090841 95.70 994.24 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
76. Ssbp3 ENSMUSG00000061887 95.70 994.24 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
77. Cd24a ENSMUSG00000047139 95.00 986.96 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
78. Ywhag ENSMUSG00000051391 95.00 986.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
79. Fscn1 ENSMUSG00000029581 93.60 972.42 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
80. Sub1 ENSMUSG00000022205 93.60 972.42 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
81. Hbb-bh1 ENSMUSG00000052217 92.90 965.15 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
82. Banf1 ENSMUSG00000024844 92.21 957.98 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
83. Hnrnpa0 ENSMUSG00000007836 92.21 957.98 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
84. Pabpc1 ENSMUSG00000022283 91.51 950.71 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
85. Tecr ENSMUSG00000031708 90.11 936.16 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
86. Tmsb10 ENSMUSG00000079523 90.11 936.16 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
87. Ywhaq ENSMUSG00000076432 90.11 936.16 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
88. Paics ENSMUSG00000029247 89.41 928.89 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
89. Cox8a ENSMUSG00000035885 88.01 914.34 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
90. Ina ENSMUSG00000034336 88.01 914.34 internexin neuronal intermediate filament protein, alpha [Source:MGI Symbol;Acc:MGI:96568]
91. Gm5805 ENSMUSG00000061848 87.32 907.17 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
92. Hnrnpa2b1 ENSMUSG00000004980 87.32 907.17 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
93. Ndufa12 ENSMUSG00000020022 85.92 892.63 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
94. Nnat ENSMUSG00000067786 85.92 892.63 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
95. Malat1 ENSMUSG00000092341 85.22 885.36 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
96. H3f3b ENSMUSG00000016559 84.52 878.09 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
97. Vim ENSMUSG00000026728 83.82 870.81 vimentin [Source:MGI Symbol;Acc:MGI:98932]
98. Ngfrap1 83.13 863.64 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
99. Gm14303 ENSMUSG00000081344 82.43 856.37 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
100. Rps9 ENSMUSG00000006333 82.43 856.37 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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