Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s24.

Sample reads: 96,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2944.31 30594.88 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2305.56 23957.51 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2178.68 22639.07 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1927.09 20024.75 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 1919.49 19945.78 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1915.16 19900.79 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1203.75 12508.39 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1191.82 12384.43 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd3 ENSMUSG00000064360 723.33 7516.26 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 699.48 7268.43 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Eef1a1 ENSMUSG00000037742 620.31 6445.76 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Co3 ENSMUSG00000064358 565.00 5871.02 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd2 ENSMUSG00000064345 418.60 4349.75 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. H19 ENSMUSG00000000031 402.33 4180.69 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Hbb-y ENSMUSG00000052187 325.34 3380.67 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Gm13340 ENSMUSG00000083563 315.58 3279.25 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Tubb2b ENSMUSG00000045136 312.32 3245.38 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
18. Mdk ENSMUSG00000027239 307.99 3200.38 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Igf2 ENSMUSG00000048583 286.30 2975.00 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Cfl1 ENSMUSG00000056201 279.79 2907.35 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Tubb5 ENSMUSG00000001525 277.62 2884.80 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Ubb ENSMUSG00000019505 263.52 2738.29 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Tuba1a ENSMUSG00000072235 250.51 2603.10 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
24. Map1b ENSMUSG00000052727 239.67 2490.46 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
25. Tpt1 ENSMUSG00000060126 229.91 2389.04 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Nedd4 ENSMUSG00000032216 226.65 2355.16 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Chchd2 ENSMUSG00000070493 224.48 2332.61 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
28. Rpsa ENSMUSG00000032518 219.06 2276.29 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Ybx1 ENSMUSG00000028639 211.47 2197.42 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
30. Npm1 ENSMUSG00000057113 208.22 2163.65 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. mt-Nd5 ENSMUSG00000064367 208.22 2163.65 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
32. Hsp90ab1 ENSMUSG00000023944 197.37 2050.91 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Hmga2 ENSMUSG00000056758 191.95 1994.59 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
34. Pkm ENSMUSG00000032294 191.95 1994.59 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Basp1 ENSMUSG00000045763 190.87 1983.37 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
36. Eif4g2 ENSMUSG00000005610 183.27 1904.39 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Rpl4 ENSMUSG00000032399 181.10 1881.84 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Tuba1b ENSMUSG00000023004 178.94 1859.40 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
39. Set ENSMUSG00000054766 168.09 1746.65 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
40. Atp5g3 ENSMUSG00000018770 164.84 1712.88 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
41. Tmsb4x ENSMUSG00000049775 160.50 1667.79 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
42. Hnrnpc ENSMUSG00000060373 159.42 1656.56 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Gm10800 ENSMUSG00000075014 151.82 1577.59 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
44. Hba-x ENSMUSG00000055609 150.74 1566.37 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
45. Cd24a ENSMUSG00000047139 147.49 1532.60 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
46. Hba-a1 ENSMUSG00000069919 145.32 1510.05 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
47. Ywhab ENSMUSG00000018326 143.15 1487.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
48. Pcbp1 ENSMUSG00000051695 136.64 1419.85 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Fkbp1a ENSMUSG00000032966 135.56 1408.63 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
50. Hsp90aa1 ENSMUSG00000021270 135.56 1408.63 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. mt-Rnr1 ENSMUSG00000064337 135.56 1408.63 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
52. Eif5a ENSMUSG00000078812 131.22 1363.53 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
53. Rpl23 ENSMUSG00000071415 131.22 1363.53 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
54. Rps26 ENSMUSG00000025362 131.22 1363.53 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Gap43 ENSMUSG00000047261 130.14 1352.31 growth associated protein 43 [Source:MGI Symbol;Acc:MGI:95639]
56. Eef1b2 ENSMUSG00000025967 126.88 1318.43 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
57. Ina ENSMUSG00000034336 126.88 1318.43 internexin neuronal intermediate filament protein, alpha [Source:MGI Symbol;Acc:MGI:96568]
58. Pbx1 ENSMUSG00000052534 125.80 1307.21 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
59. Rps20 ENSMUSG00000028234 125.80 1307.21 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
60. Stmn2 ENSMUSG00000027500 125.80 1307.21 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
61. Grb10 ENSMUSG00000020176 119.29 1239.56 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
62. Malat1 ENSMUSG00000092341 119.29 1239.56 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
63. Rps4x ENSMUSG00000031320 118.21 1228.34 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Ran ENSMUSG00000029430 111.70 1160.70 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
65. Cdkn1c ENSMUSG00000037664 110.61 1149.37 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
66. Tubb3 ENSMUSG00000062380 110.61 1149.37 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
67. Ywhae ENSMUSG00000020849 110.61 1149.37 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
68. Hmgn1 ENSMUSG00000040681 108.45 1126.92 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. U2af2 ENSMUSG00000030435 107.36 1115.60 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
70. Vim ENSMUSG00000026728 105.19 1093.05 vimentin [Source:MGI Symbol;Acc:MGI:98932]
71. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 103.02 1070.50 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
72. Myl6 ENSMUSG00000090841 101.94 1059.28 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
73. Rrm2 ENSMUSG00000020649 101.94 1059.28 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
74. Pabpc1 ENSMUSG00000022283 99.77 1036.73 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Scd2 ENSMUSG00000025203 99.77 1036.73 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
76. Stmn1 ENSMUSG00000028832 99.77 1036.73 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
77. Ywhag ENSMUSG00000051391 99.77 1036.73 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
78. Banf1 ENSMUSG00000024844 98.69 1025.51 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
79. Gm14303 ENSMUSG00000081344 98.69 1025.51 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
80. Lamp1 ENSMUSG00000031447 98.69 1025.51 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
81. Marcks ENSMUSG00000069662 98.69 1025.51 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
82. Hnrnpa0 ENSMUSG00000007836 97.60 1014.18 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
83. Rps5 ENSMUSG00000012848 97.60 1014.18 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
84. Trim28 ENSMUSG00000005566 97.60 1014.18 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
85. Calm1 ENSMUSG00000001175 96.52 1002.96 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
86. Morf4l1 ENSMUSG00000062270 96.52 1002.96 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
87. Nefl ENSMUSG00000022055 95.43 991.63 neurofilament, light polypeptide [Source:MGI Symbol;Acc:MGI:97313]
88. Fscn1 ENSMUSG00000029581 94.35 980.41 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
89. Marcksl1 ENSMUSG00000047945 94.35 980.41 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
90. Calm2 ENSMUSG00000036438 92.18 957.86 calmodulin 2 [Source:MGI Symbol;Acc:MGI:103250]
91. Ndufa12 ENSMUSG00000020022 91.09 946.53 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
92. Rps3a1 ENSMUSG00000028081 91.09 946.53 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
93. Rpl32 ENSMUSG00000057841 90.01 935.31 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
94. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 90.01 935.31 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
95. Sub1 ENSMUSG00000022205 90.01 935.31 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Gm5805 ENSMUSG00000061848 88.93 924.09 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
97. Rpl18a ENSMUSG00000045128 87.84 912.76 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
98. H3f3b ENSMUSG00000016559 86.76 901.54 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
99. Atxn7l3b ENSMUSG00000074748 84.59 878.99 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
100. Ywhaq ENSMUSG00000076432 84.59 878.99 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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