Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s22.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3447.98 35827.74 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2532.40 26314.01 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2449.57 25453.33 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd1 ENSMUSG00000064341 2267.46 23561.03 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2218.77 23055.10 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2127.72 22109.00 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1344.29 13968.43 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 794.81 8258.82 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Co3 ENSMUSG00000064358 729.68 7582.06 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. Eef1a1 ENSMUSG00000037742 705.66 7332.47 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Rnr2 ENSMUSG00000064339 641.79 6668.80 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. mt-Nd2 ENSMUSG00000064345 528.61 5492.75 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. H19 ENSMUSG00000000031 522.29 5427.08 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Actb ENSMUSG00000029580 496.99 5164.19 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Hbb-y ENSMUSG00000052187 456.53 4743.77 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Gm13340 ENSMUSG00000083563 354.73 3685.98 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Tubb2b ENSMUSG00000045136 341.45 3547.99 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
18. Mdk ENSMUSG00000027239 323.74 3363.96 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Cfl1 ENSMUSG00000056201 296.55 3081.43 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Igf2 ENSMUSG00000048583 284.54 2956.64 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Ubb ENSMUSG00000019505 275.69 2864.68 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
22. Hba-x ENSMUSG00000055609 272.53 2831.84 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
23. Tubb5 ENSMUSG00000001525 268.10 2785.81 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Tuba1b ENSMUSG00000023004 250.39 2601.79 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Rpsa ENSMUSG00000032518 233.32 2424.41 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Hba-a1 ENSMUSG00000069919 231.43 2404.77 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
27. Map1b ENSMUSG00000052727 230.79 2398.12 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
28. Tuba1a ENSMUSG00000072235 229.53 2385.03 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
29. mt-Nd5 ENSMUSG00000064367 221.31 2299.62 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
30. Pkm ENSMUSG00000032294 218.78 2273.33 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Nedd4 ENSMUSG00000032216 215.62 2240.49 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Npm1 ENSMUSG00000057113 214.99 2233.95 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
33. Tmsb4x ENSMUSG00000049775 211.82 2201.01 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
34. Chchd2 ENSMUSG00000070493 209.29 2174.72 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Tpt1 ENSMUSG00000060126 198.55 2063.12 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Eif4g2 ENSMUSG00000005610 191.59 1990.80 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Rpl4 ENSMUSG00000032399 171.99 1787.14 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Ybx1 ENSMUSG00000028639 171.99 1787.14 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
39. Gm10800 ENSMUSG00000075014 171.36 1780.59 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
40. Rpl23 ENSMUSG00000071415 166.93 1734.56 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
41. Hnrnpc ENSMUSG00000060373 166.30 1728.01 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
42. Atp5g3 ENSMUSG00000018770 156.18 1622.86 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. Stmn1 ENSMUSG00000028832 156.18 1622.86 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
44. Hsp90aa1 ENSMUSG00000021270 153.02 1590.02 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Basp1 ENSMUSG00000045763 151.12 1570.28 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
46. Hsp90ab1 ENSMUSG00000023944 147.33 1530.90 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
47. Rps26 ENSMUSG00000025362 143.53 1491.41 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
48. Rpl37 ENSMUSG00000041841 139.74 1452.03 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
49. Eef1b2 ENSMUSG00000025967 138.48 1438.94 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. Eif5a ENSMUSG00000078812 132.15 1373.16 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Rps20 ENSMUSG00000028234 130.89 1360.07 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Ywhab ENSMUSG00000018326 128.99 1340.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Cdkn1c ENSMUSG00000037664 125.83 1307.49 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
54. Ran ENSMUSG00000029430 125.83 1307.49 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
55. Tmsb10 ENSMUSG00000079523 125.83 1307.49 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
56. Rps3a1 ENSMUSG00000028081 123.93 1287.75 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
57. Pbx1 ENSMUSG00000052534 122.04 1268.11 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
58. Gm14303 ENSMUSG00000081344 120.14 1248.37 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
59. Rps4x ENSMUSG00000031320 120.14 1248.37 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
60. Fkbp1a ENSMUSG00000032966 118.24 1228.62 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
61. U2af2 ENSMUSG00000030435 116.98 1215.53 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Marcks ENSMUSG00000069662 113.82 1182.70 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
63. Rpl18a ENSMUSG00000045128 113.18 1176.05 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
64. Pcbp1 ENSMUSG00000051695 111.92 1162.95 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Stmn2 ENSMUSG00000027500 111.92 1162.95 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
66. Hmga2 ENSMUSG00000056758 108.76 1130.12 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
67. Ywhae ENSMUSG00000020849 108.76 1130.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
68. Rps5 ENSMUSG00000012848 107.49 1116.92 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Set ENSMUSG00000054766 107.49 1116.92 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
70. Banf1 ENSMUSG00000024844 106.86 1110.38 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
71. Hnrnpa0 ENSMUSG00000007836 106.86 1110.38 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
72. Hba-a2 ENSMUSG00000069917 104.33 1084.09 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
73. Hbb-bh1 ENSMUSG00000052217 104.33 1084.09 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
74. Tubb3 ENSMUSG00000062380 104.33 1084.09 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
75. Pabpc1 ENSMUSG00000022283 103.70 1077.54 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
76. Rplp1 ENSMUSG00000007892 103.70 1077.54 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
77. Cd24a ENSMUSG00000047139 103.07 1070.99 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
78. Myl6 ENSMUSG00000090841 99.90 1038.05 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
79. Vim ENSMUSG00000026728 98.64 1024.96 vimentin [Source:MGI Symbol;Acc:MGI:98932]
80. Grb10 ENSMUSG00000020176 98.01 1018.42 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
81. Hnrnpa2b1 ENSMUSG00000004980 96.11 998.67 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
82. Morf4l1 ENSMUSG00000062270 96.11 998.67 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
83. Rrm2 ENSMUSG00000020649 94.85 985.58 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
84. Tecr ENSMUSG00000031708 93.58 972.38 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
85. Gm5805 ENSMUSG00000061848 91.68 952.64 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
86. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 91.68 952.64 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
87. Fscn1 ENSMUSG00000029581 91.05 946.09 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
88. Ddx5 ENSMUSG00000020719 89.79 933.00 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
89. Marcksl1 ENSMUSG00000047945 89.79 933.00 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
90. Nefl ENSMUSG00000022055 89.79 933.00 neurofilament, light polypeptide [Source:MGI Symbol;Acc:MGI:97313]
91. Sub1 ENSMUSG00000022205 88.52 919.81 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
92. Gm9844 ENSMUSG00000091955 87.26 906.71 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
93. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 86.63 900.17 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
94. Ndufa12 ENSMUSG00000020022 86.63 900.17 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
95. Paics ENSMUSG00000029247 86.63 900.17 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
96. H3f3b ENSMUSG00000016559 85.99 893.52 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
97. Nnat ENSMUSG00000067786 85.99 893.52 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
98. Hmgn1 ENSMUSG00000040681 84.10 873.88 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
99. Son ENSMUSG00000022961 82.83 860.68 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
100. Calm1 ENSMUSG00000001175 82.20 854.14 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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