Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s21.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2965.57 30814.74 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2717.57 28237.81 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 2376.11 24689.76 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 2330.17 24212.40 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2235.67 23230.47 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1746.45 18147.07 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1414.91 14702.09 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Hbb-y ENSMUSG00000052187 851.56 8848.42 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
9. mt-Rnr2 ENSMUSG00000064339 811.36 8430.70 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Nd3 ENSMUSG00000064360 721.55 7497.50 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Eef1a1 ENSMUSG00000037742 646.37 6716.32 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. Actb ENSMUSG00000029580 604.08 6276.89 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Co3 ENSMUSG00000064358 542.99 5642.12 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. H19 ENSMUSG00000000031 454.23 4719.83 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. mt-Nd2 ENSMUSG00000064345 452.67 4703.62 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Gm13340 ENSMUSG00000083563 356.60 3705.37 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Hba-a1 ENSMUSG00000069919 319.53 3320.18 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
18. Ubb ENSMUSG00000019505 279.33 2902.47 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
19. Cfl1 ENSMUSG00000056201 262.10 2723.44 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Mdk ENSMUSG00000027239 258.97 2690.91 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Tmsb4x ENSMUSG00000049775 251.66 2614.96 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
22. Tubb5 ENSMUSG00000001525 251.66 2614.96 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Tubb2b ENSMUSG00000045136 245.91 2555.21 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
24. Tpt1 ENSMUSG00000060126 244.87 2544.40 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
25. Npm1 ENSMUSG00000057113 243.82 2533.49 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tuba1b ENSMUSG00000023004 242.78 2522.69 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. mt-Nd5 ENSMUSG00000064367 242.78 2522.69 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Rpsa ENSMUSG00000032518 239.65 2490.16 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Tuba1a ENSMUSG00000072235 233.90 2430.42 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
30. Hba-x ENSMUSG00000055609 233.38 2425.01 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
31. Igf2 ENSMUSG00000048583 232.86 2419.61 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
32. Nedd4 ENSMUSG00000032216 231.82 2408.80 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Gm10800 ENSMUSG00000075014 209.37 2175.53 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
34. Pkm ENSMUSG00000032294 194.75 2023.61 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Eif4g2 ENSMUSG00000005610 191.09 1985.58 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Map1b ENSMUSG00000052727 191.09 1985.58 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
37. Hbb-bh1 ENSMUSG00000052217 187.96 1953.06 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
38. Rpl4 ENSMUSG00000032399 183.26 1904.22 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Hnrnpc ENSMUSG00000060373 180.13 1871.70 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Hsp90ab1 ENSMUSG00000023944 178.56 1855.39 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
41. Ybx1 ENSMUSG00000028639 178.56 1855.39 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
42. Chchd2 ENSMUSG00000070493 168.12 1746.91 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
43. Atp5g3 ENSMUSG00000018770 162.38 1687.26 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Hba-a2 ENSMUSG00000069917 160.29 1665.55 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
45. Hsp90aa1 ENSMUSG00000021270 157.68 1638.43 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
46. Set ENSMUSG00000054766 141.49 1470.20 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
47. Eef1b2 ENSMUSG00000025967 140.97 1464.80 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Rpl23 ENSMUSG00000071415 135.75 1410.56 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
49. Hmga2 ENSMUSG00000056758 134.18 1394.24 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
50. Basp1 ENSMUSG00000045763 132.62 1378.03 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
51. Cdkn1c ENSMUSG00000037664 131.57 1367.12 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
52. Rps4x ENSMUSG00000031320 131.05 1361.72 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Ywhab ENSMUSG00000018326 128.96 1340.00 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Rps26 ENSMUSG00000025362 126.35 1312.88 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Ran ENSMUSG00000029430 125.83 1307.48 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
56. Eif5a ENSMUSG00000078812 123.74 1285.76 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
57. Stmn1 ENSMUSG00000028832 122.70 1274.96 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
58. Rpl18a ENSMUSG00000045128 115.39 1199.00 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
59. Grb10 ENSMUSG00000020176 114.86 1193.49 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
60. Malat1 ENSMUSG00000092341 114.86 1193.49 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
61. Marcks ENSMUSG00000069662 111.21 1155.56 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
62. Rps20 ENSMUSG00000028234 111.21 1155.56 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
63. Pabpc1 ENSMUSG00000022283 110.69 1150.16 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. Pcbp1 ENSMUSG00000051695 110.69 1150.16 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
65. Myl6 ENSMUSG00000090841 109.12 1133.85 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
66. Paics ENSMUSG00000029247 104.42 1085.01 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
67. Fkbp1a ENSMUSG00000032966 103.90 1079.61 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
68. Pbx1 ENSMUSG00000052534 102.86 1068.80 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
69. Ywhae ENSMUSG00000020849 102.86 1068.80 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
70. Stmn2 ENSMUSG00000027500 101.81 1057.89 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
71. Trim28 ENSMUSG00000005566 101.29 1052.49 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
72. Rps5 ENSMUSG00000012848 100.77 1047.08 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
73. mt-Rnr1 ENSMUSG00000064337 100.77 1047.08 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
74. Calm2 ENSMUSG00000036438 100.24 1041.58 calmodulin 2 [Source:MGI Symbol;Acc:MGI:103250]
75. Morf4l1 ENSMUSG00000062270 100.24 1041.58 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
76. Gm5805 ENSMUSG00000061848 99.72 1036.17 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
77. Vim ENSMUSG00000026728 98.68 1025.37 vimentin [Source:MGI Symbol;Acc:MGI:98932]
78. Tubb3 ENSMUSG00000062380 98.16 1019.96 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
79. Ngfrap1 96.59 1003.65 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
80. Crabp1 ENSMUSG00000032291 94.50 981.93 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
81. Rps3a1 ENSMUSG00000028081 93.98 976.53 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
82. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.98 976.53 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
83. Morf4l2 ENSMUSG00000031422 93.46 971.13 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
84. Rpl37 ENSMUSG00000041841 92.41 960.22 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
85. H3f3b ENSMUSG00000016559 91.89 954.81 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
86. Sub1 ENSMUSG00000022205 91.89 954.81 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
87. Gm5963 ENSMUSG00000052192 89.28 927.69 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
88. Rplp1 ENSMUSG00000007892 89.28 927.69 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
89. U2af2 ENSMUSG00000030435 89.28 927.69 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
90. Hmgn1 ENSMUSG00000040681 88.76 922.29 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
91. Gm14303 ENSMUSG00000081344 87.19 905.98 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
92. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 87.19 905.98 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
93. Serbp1 ENSMUSG00000036371 87.19 905.98 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
94. Hnrnpa2b1 ENSMUSG00000004980 86.67 900.57 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
95. Hnrnpa0 ENSMUSG00000007836 85.63 889.77 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
96. Hnrnpk ENSMUSG00000021546 85.10 884.26 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
97. Ddx5 ENSMUSG00000020719 84.58 878.86 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Banf1 ENSMUSG00000024844 83.54 868.05 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
99. Marcksl1 ENSMUSG00000047945 83.54 868.05 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
100. Eef2 ENSMUSG00000034994 82.49 857.14 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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