Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_2, section s20.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3148.37 32712.10 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2656.82 27604.82 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2299.54 23892.62 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Co2 ENSMUSG00000064354 2134.92 22182.19 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1941.68 20174.39 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1913.08 19877.23 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1278.50 13283.83 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Hbb-y ENSMUSG00000052187 1019.30 10590.70 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
9. mt-Rnr2 ENSMUSG00000064339 985.44 10238.89 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. mt-Co3 ENSMUSG00000064358 786.36 8170.42 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Eef1a1 ENSMUSG00000037742 734.41 7630.65 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd3 ENSMUSG00000064360 724.48 7527.47 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Hba-a1 ENSMUSG00000069919 568.03 5901.93 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
14. mt-Nd2 ENSMUSG00000064345 531.83 5525.81 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Hba-x ENSMUSG00000055609 492.72 5119.45 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
16. Actb ENSMUSG00000029580 437.26 4543.21 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Gm13340 ENSMUSG00000083563 409.24 4252.07 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. H19 ENSMUSG00000000031 409.24 4252.07 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Tubb2b ENSMUSG00000045136 407.48 4233.79 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
20. Cfl1 ENSMUSG00000056201 312.33 3245.16 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Igf2 ENSMUSG00000048583 312.33 3245.16 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Tubb5 ENSMUSG00000001525 288.39 2996.42 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Mdk ENSMUSG00000027239 286.64 2978.24 midkine [Source:MGI Symbol;Acc:MGI:96949]
24. Hba-a2 ENSMUSG00000069917 273.80 2844.83 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
25. Tpt1 ENSMUSG00000060126 263.87 2741.65 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Tmsb4x ENSMUSG00000049775 262.12 2723.47 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
27. Rpsa ENSMUSG00000032518 248.11 2577.91 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Ubb ENSMUSG00000019505 240.52 2499.04 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Tuba1b ENSMUSG00000023004 239.35 2486.89 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Npm1 ENSMUSG00000057113 237.60 2468.70 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Hbb-bh1 ENSMUSG00000052217 234.68 2438.37 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
32. mt-Nd5 ENSMUSG00000064367 231.18 2402.00 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
33. Nedd4 ENSMUSG00000032216 213.67 2220.07 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
34. Pkm ENSMUSG00000032294 204.91 2129.05 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Tuba1a ENSMUSG00000072235 200.24 2080.53 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
36. Eif4g2 ENSMUSG00000005610 199.66 2074.50 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Cdkn1c ENSMUSG00000037664 194.99 2025.98 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
38. Chchd2 ENSMUSG00000070493 189.73 1971.33 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Map1b ENSMUSG00000052727 182.73 1898.60 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
40. Rpl4 ENSMUSG00000032399 172.80 1795.42 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Hsp90aa1 ENSMUSG00000021270 171.05 1777.24 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Ybx1 ENSMUSG00000028639 167.55 1740.87 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Rps26 ENSMUSG00000025362 166.38 1728.72 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
44. Hsp90ab1 ENSMUSG00000023944 164.63 1710.53 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
45. Rpl23 ENSMUSG00000071415 157.04 1631.67 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Atp5g3 ENSMUSG00000018770 152.37 1583.15 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Rps4x ENSMUSG00000031320 144.20 1498.26 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
48. Eef1b2 ENSMUSG00000025967 138.36 1437.58 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Hnrnpc ENSMUSG00000060373 137.77 1431.45 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Fkbp1a ENSMUSG00000032966 136.02 1413.27 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Rps20 ENSMUSG00000028234 136.02 1413.27 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Basp1 ENSMUSG00000045763 134.86 1401.22 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
53. Rpl18a ENSMUSG00000045128 133.10 1382.93 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
54. Ywhab ENSMUSG00000018326 130.77 1358.72 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
55. Crabp1 ENSMUSG00000032291 127.85 1328.38 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
56. Eif5a ENSMUSG00000078812 127.27 1322.36 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
57. U2af2 ENSMUSG00000030435 127.27 1322.36 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
58. Pcbp1 ENSMUSG00000051695 124.93 1298.04 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Ran ENSMUSG00000029430 123.18 1279.86 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
60. Vim ENSMUSG00000026728 123.18 1279.86 vimentin [Source:MGI Symbol;Acc:MGI:98932]
61. Set ENSMUSG00000054766 122.60 1273.84 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
62. Hmga2 ENSMUSG00000056758 121.43 1261.68 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
63. Gm14303 ENSMUSG00000081344 117.93 1225.31 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
64. Cd24a ENSMUSG00000047139 115.59 1201.00 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
65. Ndufa12 ENSMUSG00000020022 110.92 1152.48 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
66. Hnrnpa0 ENSMUSG00000007836 109.75 1140.32 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
67. Rpl37 ENSMUSG00000041841 109.75 1140.32 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
68. Paics ENSMUSG00000029247 104.50 1085.77 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
69. Rps5 ENSMUSG00000012848 100.41 1043.28 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
70. Eef2 ENSMUSG00000034994 99.24 1031.12 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
71. Rplp1 ENSMUSG00000007892 98.66 1025.09 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
72. Tmsb10 ENSMUSG00000079523 98.66 1025.09 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
73. Hnrnpa2b1 ENSMUSG00000004980 97.49 1012.94 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
74. Rps3a1 ENSMUSG00000028081 97.49 1012.94 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Banf1 ENSMUSG00000024844 96.91 1006.91 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
76. Fscn1 ENSMUSG00000029581 96.33 1000.89 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
77. Stmn2 ENSMUSG00000027500 96.33 1000.89 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
78. Ywhae ENSMUSG00000020849 95.74 994.76 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
79. Marcks ENSMUSG00000069662 92.82 964.42 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
80. Rpl32 ENSMUSG00000057841 92.82 964.42 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
81. Sub1 ENSMUSG00000022205 92.82 964.42 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
82. Gm9844 ENSMUSG00000091955 92.24 958.39 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
83. Cdk4 ENSMUSG00000006728 91.65 952.26 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
84. Trim28 ENSMUSG00000005566 91.07 946.23 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
85. Tubb3 ENSMUSG00000062380 89.32 928.05 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
86. Grb10 ENSMUSG00000020176 88.74 922.02 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
87. Pabpc1 ENSMUSG00000022283 88.74 922.02 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
88. Rps9 ENSMUSG00000006333 86.98 903.74 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
89. Stmn1 ENSMUSG00000028832 86.98 903.74 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
90. Cox8a ENSMUSG00000035885 85.82 891.68 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
91. Pbx1 ENSMUSG00000052534 85.23 885.55 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
92. Tecr ENSMUSG00000031708 85.23 885.55 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
93. Myl6 ENSMUSG00000090841 84.65 879.53 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
94. Hbb-bt ENSMUSG00000073940 84.07 873.50 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
95. Rpl41 ENSMUSG00000093674 84.07 873.50 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
96. Hmgn1 ENSMUSG00000040681 83.48 867.37 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
97. Srsf3 ENSMUSG00000071172 83.48 867.37 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
98. Scd2 ENSMUSG00000025203 82.90 861.35 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
99. H3f3b ENSMUSG00000016559 82.31 855.22 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
100. Ldha ENSMUSG00000063229 82.31 855.22 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA