Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s19.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3271.42 33992.24 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 2525.85 26245.27 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. Ptma ENSMUSG00000026238 2300.16 23900.20 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Co2 ENSMUSG00000064354 2149.46 22334.33 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2112.69 21952.26 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2027.60 21068.12 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Nd4 ENSMUSG00000064363 1929.54 20049.21 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
8. mt-Co1 ENSMUSG00000064351 1169.55 12152.41 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Hbb-y ENSMUSG00000052187 661.93 6877.90 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd3 ENSMUSG00000064360 612.17 6360.86 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Co3 ENSMUSG00000064358 602.80 6263.49 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Eef1a1 ENSMUSG00000037742 589.82 6128.62 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Nd2 ENSMUSG00000064345 511.23 5312.02 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. Actb ENSMUSG00000029580 421.82 4382.99 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Gm13340 ENSMUSG00000083563 353.32 3671.23 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
16. H19 ENSMUSG00000000031 330.96 3438.90 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. Hba-x ENSMUSG00000055609 322.31 3349.02 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
18. Tmsb4x ENSMUSG00000049775 301.40 3131.75 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
19. Hba-a1 ENSMUSG00000069919 278.33 2892.03 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
20. Rpsa ENSMUSG00000032518 268.23 2787.09 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Ubb ENSMUSG00000019505 261.74 2719.65 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
22. Tubb2b ENSMUSG00000045136 256.70 2667.28 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
23. Cfl1 ENSMUSG00000056201 248.76 2584.78 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Tuba1b ENSMUSG00000023004 246.60 2562.34 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Ybx1 ENSMUSG00000028639 243.00 2524.93 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
26. mt-Nd5 ENSMUSG00000064367 237.23 2464.98 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
27. Mdk ENSMUSG00000027239 235.78 2449.91 midkine [Source:MGI Symbol;Acc:MGI:96949]
28. Set ENSMUSG00000054766 231.46 2405.02 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
29. Tubb5 ENSMUSG00000001525 221.36 2300.08 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Npm1 ENSMUSG00000057113 220.64 2292.60 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Malat1 ENSMUSG00000092341 217.76 2262.67 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
32. Pkm ENSMUSG00000032294 216.32 2247.71 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Igf2 ENSMUSG00000048583 214.87 2232.64 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
34. Hmga2 ENSMUSG00000056758 212.71 2210.20 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Tpt1 ENSMUSG00000060126 212.71 2210.20 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Nedd4 ENSMUSG00000032216 201.17 2090.29 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
37. Hsp90ab1 ENSMUSG00000023944 193.24 2007.89 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Tuba1a ENSMUSG00000072235 191.80 1992.93 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
39. Basp1 ENSMUSG00000045763 191.08 1985.45 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
40. Cdkn1c ENSMUSG00000037664 191.08 1985.45 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
41. Rpl4 ENSMUSG00000032399 191.08 1985.45 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Atp5g3 ENSMUSG00000018770 189.64 1970.49 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. mt-Rnr1 ENSMUSG00000064337 182.43 1895.57 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
44. Eif4g2 ENSMUSG00000005610 181.71 1888.09 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Map1b ENSMUSG00000052727 178.10 1850.58 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
46. Hbb-bh1 ENSMUSG00000052217 177.38 1843.10 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
47. Chchd2 ENSMUSG00000070493 168.01 1745.74 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Hsp90aa1 ENSMUSG00000021270 160.07 1663.23 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Rps26 ENSMUSG00000025362 153.58 1595.80 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Rpl23 ENSMUSG00000071415 149.26 1550.91 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
51. Fkbp1a ENSMUSG00000032966 146.37 1520.88 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
52. Hnrnpc ENSMUSG00000060373 146.37 1520.88 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
53. Rps20 ENSMUSG00000028234 143.49 1490.96 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
54. Stmn1 ENSMUSG00000028832 134.84 1401.08 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
55. Hba-a2 ENSMUSG00000069917 133.39 1386.01 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
56. Rps4x ENSMUSG00000031320 132.67 1378.53 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
57. Gm14303 ENSMUSG00000081344 131.95 1371.05 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
58. Ran ENSMUSG00000029430 129.79 1348.60 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
59. Eif5a ENSMUSG00000078812 126.91 1318.68 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
60. Vim ENSMUSG00000026728 126.18 1311.09 vimentin [Source:MGI Symbol;Acc:MGI:98932]
61. Eef1b2 ENSMUSG00000025967 123.30 1281.17 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
62. Rps5 ENSMUSG00000012848 123.30 1281.17 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
63. Rplp1 ENSMUSG00000007892 121.14 1258.73 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
64. U2af2 ENSMUSG00000030435 121.14 1258.73 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
65. Pcbp1 ENSMUSG00000051695 118.25 1228.70 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Marcks ENSMUSG00000069662 116.09 1206.25 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
67. Rpl18a ENSMUSG00000045128 113.21 1176.33 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
68. Rps3a1 ENSMUSG00000028081 111.04 1153.78 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
69. Hmgn1 ENSMUSG00000040681 107.44 1116.37 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
70. Myl6 ENSMUSG00000090841 104.55 1086.34 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
71. Banf1 ENSMUSG00000024844 103.83 1078.86 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
72. Pabpc1 ENSMUSG00000022283 101.67 1056.42 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
73. Crabp1 ENSMUSG00000032291 97.34 1011.43 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
74. Trp53i11 ENSMUSG00000068735 96.62 1003.95 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
75. Tubb3 ENSMUSG00000062380 96.62 1003.95 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
76. Elavl4 ENSMUSG00000028546 94.46 981.50 ELAV like RNA binding protein 4 [Source:MGI Symbol;Acc:MGI:107427]
77. Cox8a ENSMUSG00000035885 93.02 966.54 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
78. Hnrnpa2b1 ENSMUSG00000004980 93.02 966.54 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
79. Calm1 ENSMUSG00000001175 92.29 958.95 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
80. Gm5805 ENSMUSG00000061848 92.29 958.95 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
81. Grb10 ENSMUSG00000020176 91.57 951.47 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
82. Rpl8 ENSMUSG00000003970 91.57 951.47 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
83. Ywhab ENSMUSG00000018326 90.85 943.99 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
84. Rpl32 ENSMUSG00000057841 90.13 936.51 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
85. Rpl37 ENSMUSG00000041841 89.41 929.03 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
86. Tpm4 ENSMUSG00000031799 89.41 929.03 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
87. H3f3b ENSMUSG00000016559 88.69 921.55 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
88. Ddx5 ENSMUSG00000020719 87.25 906.59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
89. Ndufa12 ENSMUSG00000020022 86.53 899.10 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
90. Rps9 ENSMUSG00000006333 86.53 899.10 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
91. Cd24a ENSMUSG00000047139 84.36 876.56 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
92. Gm5963 ENSMUSG00000052192 84.36 876.56 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
93. Mapre1 ENSMUSG00000027479 84.36 876.56 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
94. Eef2 ENSMUSG00000034994 83.64 869.08 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
95. Hnrnpa0 ENSMUSG00000007836 83.64 869.08 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
96. Rpl41 ENSMUSG00000093674 83.64 869.08 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
97. Hnrnpk ENSMUSG00000021546 82.92 861.59 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
98. Rpl26 ENSMUSG00000060938 82.92 861.59 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
99. Ywhae ENSMUSG00000020849 82.92 861.59 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
100. Ccnd2 ENSMUSG00000000184 82.20 854.11 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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