Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s18.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3066.55 31864.63 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2845.61 29568.83 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2253.68 23418.07 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2244.82 23326.00 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2093.65 21755.19 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2033.29 21127.99 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1280.22 13302.81 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1078.66 11208.39 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Hbb-y ENSMUSG00000052187 821.73 8538.62 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd3 ENSMUSG00000064360 728.15 7566.23 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Eef1a1 ENSMUSG00000037742 714.86 7428.13 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. Actb ENSMUSG00000029580 590.83 6139.33 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Co3 ENSMUSG00000064358 548.75 5702.08 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. mt-Nd2 ENSMUSG00000064345 521.06 5414.35 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Hba-x ENSMUSG00000055609 489.50 5086.41 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
16. Hba-a1 ENSMUSG00000069919 430.25 4470.74 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
17. Gm13340 ENSMUSG00000083563 345.53 3590.41 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Mdk ENSMUSG00000027239 330.02 3429.25 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. H19 ENSMUSG00000000031 306.77 3187.66 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
20. Tmsb4x ENSMUSG00000049775 300.12 3118.56 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
21. Rpsa ENSMUSG00000032518 284.06 2951.68 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Cfl1 ENSMUSG00000056201 273.54 2842.36 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Tubb5 ENSMUSG00000001525 270.77 2813.58 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Ubb ENSMUSG00000019505 268.00 2784.80 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Npm1 ENSMUSG00000057113 253.05 2629.45 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Pkm ENSMUSG00000032294 241.43 2508.71 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Tubb2b ENSMUSG00000045136 241.43 2508.71 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
28. Ybx1 ENSMUSG00000028639 229.80 2387.86 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Nedd4 ENSMUSG00000032216 227.58 2364.79 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Tpt1 ENSMUSG00000060126 224.26 2330.29 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. mt-Nd5 ENSMUSG00000064367 222.05 2307.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
32. Tuba1b ENSMUSG00000023004 217.62 2261.30 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
33. Eif4g2 ENSMUSG00000005610 217.06 2255.48 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Igf2 ENSMUSG00000048583 217.06 2255.48 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
35. Hbb-bh1 ENSMUSG00000052217 214.29 2226.69 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
36. Tuba1a ENSMUSG00000072235 209.86 2180.66 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
37. Chchd2 ENSMUSG00000070493 207.09 2151.88 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Cdkn1c ENSMUSG00000037664 193.81 2013.89 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
39. Atp5g3 ENSMUSG00000018770 188.82 1962.04 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
40. Rpl4 ENSMUSG00000032399 181.07 1881.50 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Hsp90aa1 ENSMUSG00000021270 176.09 1829.76 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Hba-a2 ENSMUSG00000069917 166.67 1731.87 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
43. Hnrnpc ENSMUSG00000060373 164.46 1708.91 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Set ENSMUSG00000054766 163.35 1697.38 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
45. Basp1 ENSMUSG00000045763 160.03 1662.88 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
46. Hsp90ab1 ENSMUSG00000023944 160.03 1662.88 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
47. Eif5a ENSMUSG00000078812 156.15 1622.56 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Fkbp1a ENSMUSG00000032966 156.15 1622.56 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
49. Rpl23 ENSMUSG00000071415 154.49 1605.31 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
50. Eef1b2 ENSMUSG00000025967 153.38 1593.78 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Rps26 ENSMUSG00000025362 148.95 1547.74 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Ran ENSMUSG00000029430 143.97 1496.00 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Rps4x ENSMUSG00000031320 138.43 1438.43 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
54. Rps20 ENSMUSG00000028234 135.66 1409.65 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Map1b ENSMUSG00000052727 132.34 1375.15 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
56. Stmn1 ENSMUSG00000028832 127.91 1329.12 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
57. Gm14303 ENSMUSG00000081344 126.80 1317.58 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
58. Pcbp1 ENSMUSG00000051695 125.14 1300.33 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Gm15459 ENSMUSG00000100801 121.27 1260.12 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
60. Tubb3 ENSMUSG00000062380 119.05 1237.05 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
61. Hmga2 ENSMUSG00000056758 116.28 1208.27 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
62. Rps5 ENSMUSG00000012848 116.28 1208.27 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
63. Banf1 ENSMUSG00000024844 115.73 1202.55 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
64. Vim ENSMUSG00000026728 114.07 1185.31 vimentin [Source:MGI Symbol;Acc:MGI:98932]
65. Malat1 ENSMUSG00000092341 113.51 1179.49 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
66. Ywhae ENSMUSG00000020849 113.51 1179.49 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
67. Grb10 ENSMUSG00000020176 112.41 1168.06 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
68. Hmgn1 ENSMUSG00000040681 111.85 1162.24 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. Pabpc1 ENSMUSG00000022283 111.85 1162.24 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. U2af2 ENSMUSG00000030435 110.75 1150.81 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
71. Rplp1 ENSMUSG00000007892 107.42 1116.20 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
72. Rps3a1 ENSMUSG00000028081 105.21 1093.24 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
73. Trp53i11 ENSMUSG00000068735 104.65 1087.42 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
74. Ywhab ENSMUSG00000018326 104.65 1087.42 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
75. Cadm1 ENSMUSG00000032076 103.55 1075.99 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
76. Rpl32 ENSMUSG00000057841 102.99 1070.17 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
77. Hnrnpa2b1 ENSMUSG00000004980 101.33 1052.92 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
78. Rpl37 ENSMUSG00000041841 101.33 1052.92 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
79. Cd24a ENSMUSG00000047139 99.67 1035.67 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
80. Paics ENSMUSG00000029247 99.67 1035.67 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
81. Ndufa12 ENSMUSG00000020022 96.90 1006.89 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
82. Gm5805 ENSMUSG00000061848 94.69 983.93 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
83. Rpl18a ENSMUSG00000045128 93.58 972.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
84. Ldha ENSMUSG00000063229 93.03 966.68 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
85. Myl6 ENSMUSG00000090841 91.92 955.14 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
86. Cox8a ENSMUSG00000035885 91.37 949.43 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
87. Ywhaz ENSMUSG00000022285 91.37 949.43 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
88. Marcks ENSMUSG00000069662 90.81 943.61 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
89. Fscn1 ENSMUSG00000029581 90.26 937.89 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
90. Marcksl1 ENSMUSG00000047945 89.15 926.36 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
91. Hnrnpa0 ENSMUSG00000007836 87.49 909.11 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
92. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 87.49 909.11 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
93. Ddx5 ENSMUSG00000020719 86.94 903.40 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
94. Elavl4 ENSMUSG00000028546 86.94 903.40 ELAV like RNA binding protein 4 [Source:MGI Symbol;Acc:MGI:107427]
95. Sub1 ENSMUSG00000022205 85.83 891.86 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Rpl8 ENSMUSG00000003970 83.61 868.79 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
97. Pbx1 ENSMUSG00000052534 82.51 857.36 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
98. Ywhaq ENSMUSG00000076432 81.95 851.55 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
99. Rpl41 ENSMUSG00000093674 81.40 845.83 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
100. Anp32b ENSMUSG00000028333 80.84 840.01 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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