Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s17.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3087.74 32079.69 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2586.29 26869.93 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2257.37 23452.66 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2199.58 22852.26 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2061.89 21421.75 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1292.72 13430.55 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1251.07 12997.83 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Hbb-y ENSMUSG00000052187 851.61 8847.69 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
9. mt-Rnr2 ENSMUSG00000064339 786.17 8167.81 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. Eef1a1 ENSMUSG00000037742 744.53 7735.20 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. Actb ENSMUSG00000029580 727.53 7558.58 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd3 ENSMUSG00000064360 628.09 6525.46 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. mt-Co3 ENSMUSG00000064358 544.80 5660.13 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. mt-Nd2 ENSMUSG00000064345 455.55 4732.88 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Hba-x ENSMUSG00000055609 414.76 4309.10 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
16. Gm13340 ENSMUSG00000083563 397.76 4132.48 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Hba-a1 ENSMUSG00000069919 395.21 4105.98 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
18. Tmsb4x ENSMUSG00000049775 361.21 3752.75 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
19. Tuba1b ENSMUSG00000023004 301.72 3134.68 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. H19 ENSMUSG00000000031 297.47 3090.53 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
21. Mdk ENSMUSG00000027239 284.72 2958.06 midkine [Source:MGI Symbol;Acc:MGI:96949]
22. Ubb ENSMUSG00000019505 277.92 2887.41 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Rpsa ENSMUSG00000032518 271.12 2816.77 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Tubb5 ENSMUSG00000001525 262.62 2728.46 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Npm1 ENSMUSG00000057113 256.67 2666.64 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tubb2b ENSMUSG00000045136 242.23 2516.62 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
27. Cfl1 ENSMUSG00000056201 234.58 2437.14 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Tuba1a ENSMUSG00000072235 228.63 2375.32 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
29. Nedd4 ENSMUSG00000032216 227.78 2366.49 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. mt-Nd5 ENSMUSG00000064367 226.93 2357.66 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
31. Hbb-bh1 ENSMUSG00000052217 220.13 2287.01 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
32. Eif4g2 ENSMUSG00000005610 217.58 2260.52 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Tpt1 ENSMUSG00000060126 217.58 2260.52 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Ybx1 ENSMUSG00000028639 200.58 2083.90 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
35. Pkm ENSMUSG00000032294 198.88 2066.24 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Hba-a2 ENSMUSG00000069917 197.18 2048.58 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
37. Atp5g3 ENSMUSG00000018770 196.33 2039.75 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Set ENSMUSG00000054766 192.93 2004.42 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
39. Igf2 ENSMUSG00000048583 186.98 1942.61 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
40. Hsp90ab1 ENSMUSG00000023944 181.88 1889.62 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
41. Rpl4 ENSMUSG00000032399 179.33 1863.13 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Map1b ENSMUSG00000052727 176.78 1836.63 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
43. Eif5a ENSMUSG00000078812 172.53 1792.48 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Hnrnpc ENSMUSG00000060373 163.18 1695.34 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Chchd2 ENSMUSG00000070493 161.48 1677.68 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Hsp90aa1 ENSMUSG00000021270 159.78 1660.01 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
47. Rps4x ENSMUSG00000031320 154.68 1607.03 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
48. Vim ENSMUSG00000026728 152.98 1589.37 vimentin [Source:MGI Symbol;Acc:MGI:98932]
49. Cdkn1c ENSMUSG00000037664 150.43 1562.87 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
50. Fkbp1a ENSMUSG00000032966 147.04 1527.65 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Rps20 ENSMUSG00000028234 143.64 1492.33 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Ywhab ENSMUSG00000018326 141.09 1465.84 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Rpl23 ENSMUSG00000071415 140.24 1457.01 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
54. Stmn1 ENSMUSG00000028832 138.54 1439.34 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
55. Rps26 ENSMUSG00000025362 137.69 1430.51 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
56. Ran ENSMUSG00000029430 133.44 1386.36 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
57. Basp1 ENSMUSG00000045763 132.59 1377.53 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
58. Cadm1 ENSMUSG00000032076 132.59 1377.53 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
59. Eef1b2 ENSMUSG00000025967 130.04 1351.03 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
60. Ywhae ENSMUSG00000020849 128.34 1333.37 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
61. Pcbp1 ENSMUSG00000051695 126.64 1315.71 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
62. Rpl18a ENSMUSG00000045128 123.24 1280.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
63. Hmga2 ENSMUSG00000056758 119.84 1245.06 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
64. U2af2 ENSMUSG00000030435 119.84 1245.06 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
65. Rplp1 ENSMUSG00000007892 116.44 1209.74 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Pabpc1 ENSMUSG00000022283 114.74 1192.08 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
67. Grb10 ENSMUSG00000020176 113.89 1183.25 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
68. Hnrnpa0 ENSMUSG00000007836 111.34 1156.75 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
69. Tubb3 ENSMUSG00000062380 110.49 1147.92 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
70. Marcks ENSMUSG00000069662 108.79 1130.26 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
71. Hmgn1 ENSMUSG00000040681 107.94 1121.43 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
72. Rps3a1 ENSMUSG00000028081 107.94 1121.43 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
73. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 106.24 1103.77 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
74. Lamp1 ENSMUSG00000031447 104.54 1086.11 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
75. Sub1 ENSMUSG00000022205 103.69 1077.27 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
76. Trim28 ENSMUSG00000005566 103.69 1077.27 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
77. Gm14303 ENSMUSG00000081344 101.99 1059.61 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
78. Trp53i11 ENSMUSG00000068735 101.14 1050.78 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
79. Hnrnpa2b1 ENSMUSG00000004980 100.29 1041.95 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
80. Paics ENSMUSG00000029247 99.44 1033.12 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
81. Marcksl1 ENSMUSG00000047945 98.59 1024.29 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
82. Rps5 ENSMUSG00000012848 98.59 1024.29 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
83. Myl6 ENSMUSG00000090841 97.74 1015.46 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
84. Hbb-bt ENSMUSG00000073940 96.04 997.80 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
85. Ndufa12 ENSMUSG00000020022 95.19 988.96 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
86. Rpl32 ENSMUSG00000057841 93.49 971.30 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
87. Rps9 ENSMUSG00000006333 93.49 971.30 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
88. Anp32b ENSMUSG00000028333 92.64 962.47 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
89. Gm10800 ENSMUSG00000075014 90.94 944.81 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
90. Rpl8 ENSMUSG00000003970 90.94 944.81 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Rrm2 ENSMUSG00000020649 89.24 927.15 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
92. Sfpq ENSMUSG00000028820 88.39 918.32 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
93. Cdk4 ENSMUSG00000006728 87.54 909.49 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
94. Ngfrap1 86.69 900.65 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
95. Cox8a ENSMUSG00000035885 85.84 891.82 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
96. Slc25a5 ENSMUSG00000016319 84.99 882.99 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
97. Elavl4 ENSMUSG00000028546 84.14 874.16 ELAV like RNA binding protein 4 [Source:MGI Symbol;Acc:MGI:107427]
98. Hnrnph1 ENSMUSG00000007850 84.14 874.16 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
99. Gm5805 ENSMUSG00000061848 82.44 856.50 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
100. Gm5963 ENSMUSG00000052192 82.44 856.50 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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