Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s16.

Sample reads: 96,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2955.84 30710.71 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2884.53 29969.81 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2248.89 23365.61 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2081.74 21628.95 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2060.27 21405.88 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1965.19 20418.01 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1298.88 13495.16 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 953.84 9910.25 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Hbb-y ENSMUSG00000052187 855.70 8890.59 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. Eef1a1 ENSMUSG00000037742 685.48 7122.03 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Nd3 ENSMUSG00000064360 654.81 6803.37 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Actb ENSMUSG00000029580 627.97 6524.51 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Co3 ENSMUSG00000064358 561.26 5831.40 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. mt-Nd2 ENSMUSG00000064345 516.03 5361.47 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Hba-a1 ENSMUSG00000069919 478.46 4971.12 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
16. Hba-x ENSMUSG00000055609 378.01 3927.46 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
17. Gm13340 ENSMUSG00000083563 361.91 3760.19 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Tuba1b ENSMUSG00000023004 330.47 3433.53 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. Npm1 ENSMUSG00000057113 311.30 3234.36 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Rpsa ENSMUSG00000032518 309.00 3210.46 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
21. Tmsb4x ENSMUSG00000049775 292.90 3043.18 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
22. Mdk ENSMUSG00000027239 289.07 3003.39 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. mt-Nd5 ENSMUSG00000064367 279.10 2899.80 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
24. Cfl1 ENSMUSG00000056201 276.03 2867.91 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Tubb5 ENSMUSG00000001525 265.30 2756.42 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Pkm ENSMUSG00000032294 252.26 2620.94 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Hba-a2 ENSMUSG00000069917 246.90 2565.25 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
28. Nedd4 ENSMUSG00000032216 236.16 2453.66 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Tuba1a ENSMUSG00000072235 231.56 2405.87 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
30. Ubb ENSMUSG00000019505 227.73 2366.08 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Tpt1 ENSMUSG00000060126 216.22 2246.49 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Hbb-bh1 ENSMUSG00000052217 208.56 2166.91 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
33. H19 ENSMUSG00000000031 207.02 2150.90 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
34. Rpl4 ENSMUSG00000032399 191.69 1991.63 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Hsp90ab1 ENSMUSG00000023944 185.55 1927.83 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Ybx1 ENSMUSG00000028639 183.25 1903.94 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
37. Tubb2b ENSMUSG00000045136 180.19 1872.15 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
38. Eif4g2 ENSMUSG00000005610 179.42 1864.15 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Hnrnpc ENSMUSG00000060373 177.12 1840.25 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Rps20 ENSMUSG00000028234 175.59 1824.35 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Chchd2 ENSMUSG00000070493 171.75 1784.46 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Gm10800 ENSMUSG00000075014 169.45 1760.56 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
43. Hsp90aa1 ENSMUSG00000021270 168.69 1752.66 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
44. Ran ENSMUSG00000029430 161.79 1680.97 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
45. Rpl23 ENSMUSG00000071415 158.72 1649.08 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Eif5a ENSMUSG00000078812 154.88 1609.18 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Rps26 ENSMUSG00000025362 151.05 1569.39 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
48. Cdkn1c ENSMUSG00000037664 149.52 1553.49 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
49. Rpl18a ENSMUSG00000045128 148.75 1545.49 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
50. Rplp1 ENSMUSG00000007892 147.22 1529.59 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
51. Map1b ENSMUSG00000052727 145.68 1513.59 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
52. Rps4x ENSMUSG00000031320 141.08 1465.80 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Set ENSMUSG00000054766 141.08 1465.80 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
54. Atp5g3 ENSMUSG00000018770 139.55 1449.90 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
55. Tubb3 ENSMUSG00000062380 139.55 1449.90 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
56. Basp1 ENSMUSG00000045763 136.48 1418.01 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
57. Eef1b2 ENSMUSG00000025967 136.48 1418.01 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Fkbp1a ENSMUSG00000032966 135.72 1410.11 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
59. Rps5 ENSMUSG00000012848 135.72 1410.11 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
60. Gm14303 ENSMUSG00000081344 132.65 1378.21 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
61. Pcbp1 ENSMUSG00000051695 132.65 1378.21 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
62. Rps9 ENSMUSG00000006333 131.12 1362.32 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
63. Vim ENSMUSG00000026728 131.12 1362.32 vimentin [Source:MGI Symbol;Acc:MGI:98932]
64. Ywhab ENSMUSG00000018326 125.75 1306.52 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
65. Hmga2 ENSMUSG00000056758 122.68 1274.63 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
66. Igf2 ENSMUSG00000048583 121.15 1258.73 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
67. Stmn1 ENSMUSG00000028832 116.55 1210.94 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
68. Ndufa12 ENSMUSG00000020022 115.78 1202.94 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
69. Banf1 ENSMUSG00000024844 114.25 1187.04 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
70. U2af2 ENSMUSG00000030435 112.71 1171.04 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
71. Ywhae ENSMUSG00000020849 110.41 1147.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
72. Rps3a1 ENSMUSG00000028081 108.88 1131.25 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
73. Myl6 ENSMUSG00000090841 108.11 1123.25 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
74. Paics ENSMUSG00000029247 104.28 1083.45 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
75. Cadm1 ENSMUSG00000032076 101.98 1059.56 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
76. Grb10 ENSMUSG00000020176 101.98 1059.56 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
77. Hnrnpa2b1 ENSMUSG00000004980 101.98 1059.56 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
78. Rpl32 ENSMUSG00000057841 101.21 1051.56 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
79. Rpl37 ENSMUSG00000041841 100.44 1043.56 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
80. Cox8a ENSMUSG00000035885 98.91 1027.66 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
81. Pabpc1 ENSMUSG00000022283 98.91 1027.66 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
82. Srsf3 ENSMUSG00000071172 98.14 1019.66 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
83. Gm5805 ENSMUSG00000061848 97.38 1011.76 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
84. Cd24a ENSMUSG00000047139 96.61 1003.76 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
85. Marcks ENSMUSG00000069662 95.84 995.76 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
86. Hmgn1 ENSMUSG00000040681 92.01 955.97 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
87. Eef2 ENSMUSG00000034994 91.24 947.97 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
88. Gnb2l1 Gnb2l1 90.48 940.07
89. Rpl41 ENSMUSG00000093674 90.48 940.07 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
90. Anp32b ENSMUSG00000028333 88.18 916.18 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
91. Fscn1 ENSMUSG00000029581 87.41 908.18 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
92. Rpl8 ENSMUSG00000003970 87.41 908.18 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
93. Pbx1 ENSMUSG00000052534 86.64 900.18 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
94. Slc25a5 ENSMUSG00000016319 86.64 900.18 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
95. Sub1 ENSMUSG00000022205 86.64 900.18 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Trim28 ENSMUSG00000005566 86.64 900.18 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
97. Scd2 ENSMUSG00000025203 85.88 892.28 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
98. Hnrnph1 ENSMUSG00000007850 84.34 876.28 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
99. Ldha ENSMUSG00000063229 83.58 868.38 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
100. Son ENSMUSG00000022961 82.81 860.38 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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