Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s15.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2834.85 29450.70 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2346.13 24373.49 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2293.66 23828.39 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2154.99 22387.77 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1978.85 20557.89 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1879.90 19529.91 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1240.53 12887.62 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Eef1a1 ENSMUSG00000037742 752.56 7818.20 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
9. Actb ENSMUSG00000029580 733.07 7615.72 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Rnr2 ENSMUSG00000064339 651.37 6766.96 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. Hbb-y ENSMUSG00000052187 643.13 6681.35 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
12. mt-Nd3 ENSMUSG00000064360 613.89 6377.58 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. mt-Co3 ENSMUSG00000064358 502.96 5225.15 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. mt-Nd2 ENSMUSG00000064345 446.74 4641.09 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Tuba1b ENSMUSG00000023004 341.80 3550.89 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
16. Gm13340 ENSMUSG00000083563 311.07 3231.65 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Hba-a1 ENSMUSG00000069919 307.32 3192.69 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
18. Hba-x ENSMUSG00000055609 298.33 3099.29 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
19. Tubb5 ENSMUSG00000001525 296.83 3083.71 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
20. Pkm ENSMUSG00000032294 294.58 3060.33 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
21. Tmsb4x ENSMUSG00000049775 291.58 3029.17 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
22. Cfl1 ENSMUSG00000056201 287.83 2990.21 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Mdk ENSMUSG00000027239 284.83 2959.04 midkine [Source:MGI Symbol;Acc:MGI:96949]
24. Rpsa ENSMUSG00000032518 281.09 2920.19 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Npm1 ENSMUSG00000057113 266.09 2764.36 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Nedd4 ENSMUSG00000032216 257.10 2670.96 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Ubb ENSMUSG00000019505 247.36 2569.77 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Tpt1 ENSMUSG00000060126 245.86 2554.19 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Tuba1a ENSMUSG00000072235 224.12 2328.34 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
30. Tubb2b ENSMUSG00000045136 212.88 2211.57 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
31. Rpl4 ENSMUSG00000032399 204.63 2125.86 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. mt-Nd5 ENSMUSG00000064367 203.13 2110.28 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
33. Hsp90aa1 ENSMUSG00000021270 198.63 2063.53 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
34. Eif4g2 ENSMUSG00000005610 193.39 2009.09 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. H19 ENSMUSG00000000031 191.14 1985.72 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
36. Ran ENSMUSG00000029430 190.39 1977.92 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
37. Hnrnpc ENSMUSG00000060373 189.64 1970.13 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
38. Chchd2 ENSMUSG00000070493 185.89 1931.17 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Ybx1 ENSMUSG00000028639 183.64 1907.80 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
40. Eif5a ENSMUSG00000078812 178.40 1853.36 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Hsp90ab1 ENSMUSG00000023944 178.40 1853.36 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
42. Hba-a2 ENSMUSG00000069917 173.15 1798.82 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
43. Atp5g3 ENSMUSG00000018770 161.91 1682.05 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Rpl23 ENSMUSG00000071415 161.91 1682.05 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Map1b ENSMUSG00000052727 161.16 1674.26 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
46. Cdkn1c ENSMUSG00000037664 158.91 1650.89 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
47. Hbb-bh1 ENSMUSG00000052217 158.91 1650.89 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
48. Set ENSMUSG00000054766 151.41 1572.97 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
49. Rps26 ENSMUSG00000025362 147.66 1534.01 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Rps4x ENSMUSG00000031320 147.66 1534.01 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
51. Rpl18a ENSMUSG00000045128 146.91 1526.22 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
52. Rps20 ENSMUSG00000028234 146.91 1526.22 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Fkbp1a ENSMUSG00000032966 146.16 1518.43 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Vim ENSMUSG00000026728 138.67 1440.62 vimentin [Source:MGI Symbol;Acc:MGI:98932]
55. Eef1b2 ENSMUSG00000025967 137.17 1425.03 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Banf1 ENSMUSG00000024844 134.17 1393.87 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
57. Paics ENSMUSG00000029247 134.17 1393.87 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
58. Ywhab ENSMUSG00000018326 134.17 1393.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. Rps5 ENSMUSG00000012848 130.42 1354.91 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
60. Igf2 ENSMUSG00000048583 126.68 1316.05 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
61. Stmn1 ENSMUSG00000028832 125.93 1308.26 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
62. U2af2 ENSMUSG00000030435 119.93 1245.93 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
63. Ywhae ENSMUSG00000020849 117.68 1222.55 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
64. Grb10 ENSMUSG00000020176 116.93 1214.76 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
65. Pcbp1 ENSMUSG00000051695 115.43 1199.18 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Rplp1 ENSMUSG00000007892 115.43 1199.18 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
67. Trim28 ENSMUSG00000005566 115.43 1199.18 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
68. Gm5805 ENSMUSG00000061848 114.68 1191.39 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
69. Rps9 ENSMUSG00000006333 112.43 1168.01 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
70. Rps3a1 ENSMUSG00000028081 110.94 1152.53 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
71. Ldha ENSMUSG00000063229 106.44 1105.78 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
72. Rpl37 ENSMUSG00000041841 106.44 1105.78 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
73. Rrm2 ENSMUSG00000020649 106.44 1105.78 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
74. Basp1 ENSMUSG00000045763 105.69 1097.99 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
75. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 105.69 1097.99 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
76. Gm10800 ENSMUSG00000075014 104.94 1090.20 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
77. Tubb3 ENSMUSG00000062380 104.19 1082.41 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
78. Cd24a ENSMUSG00000047139 103.44 1074.62 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
79. Marcks ENSMUSG00000069662 103.44 1074.62 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
80. Gm14303 ENSMUSG00000081344 102.69 1066.83 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
81. Rpl32 ENSMUSG00000057841 102.69 1066.83 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
82. Ndufa12 ENSMUSG00000020022 101.94 1059.03 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
83. Scd2 ENSMUSG00000025203 101.94 1059.03 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
84. Hmgn1 ENSMUSG00000040681 101.19 1051.24 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
85. Myl6 ENSMUSG00000090841 100.44 1043.45 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
86. Lamp1 ENSMUSG00000031447 99.69 1035.66 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
87. Sub1 ENSMUSG00000022205 99.69 1035.66 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
88. Pabpc1 ENSMUSG00000022283 98.94 1027.87 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
89. Trp53i11 ENSMUSG00000068735 98.94 1027.87 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
90. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.19 1020.08 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
91. Hmga2 ENSMUSG00000056758 95.94 996.70 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
92. Cadm1 ENSMUSG00000032076 93.70 973.43 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
93. Hnrnpa2b1 ENSMUSG00000004980 92.95 965.64 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
94. Eef2 ENSMUSG00000034994 90.70 942.26 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
95. Hnrnpa0 ENSMUSG00000007836 89.95 934.47 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
96. Ngfrap1 89.20 926.68 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
97. Prdx1 ENSMUSG00000028691 88.45 918.89 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
98. Srsf3 ENSMUSG00000071172 87.70 911.10 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
99. Cdk4 ENSMUSG00000006728 86.95 903.31 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
100. Hspe1 ENSMUSG00000073676 86.95 903.31 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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