Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s13.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3291.09 34196.62 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2908.38 30220.01 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2210.59 22969.51 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2176.77 22618.10 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2155.92 22401.45 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1941.74 20175.98 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1260.86 13101.18 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Eef1a1 ENSMUSG00000037742 789.09 8199.17 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
9. mt-Nd3 ENSMUSG00000064360 657.20 6828.75 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 555.75 5774.61 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. mt-Rnr2 ENSMUSG00000064339 497.69 5171.33 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. Hbb-y ENSMUSG00000052187 484.73 5036.67 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
13. mt-Nd2 ENSMUSG00000064345 482.47 5013.19 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. Actb ENSMUSG00000029580 453.73 4714.56 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Mdk ENSMUSG00000027239 346.64 3601.82 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Gm13340 ENSMUSG00000083563 339.87 3531.48 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Tuba1b ENSMUSG00000023004 330.86 3437.86 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
18. Npm1 ENSMUSG00000057113 322.96 3355.77 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
19. Rpsa ENSMUSG00000032518 321.27 3338.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Rpl18a ENSMUSG00000045128 300.98 3127.38 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
21. Cfl1 ENSMUSG00000056201 279.00 2899.00 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Ubb ENSMUSG00000019505 267.16 2775.97 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Hba-a1 ENSMUSG00000069919 259.84 2699.91 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. Tpt1 ENSMUSG00000060126 255.89 2658.87 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
25. Pkm ENSMUSG00000032294 250.26 2600.37 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Tubb5 ENSMUSG00000001525 244.62 2541.77 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Nedd4 ENSMUSG00000032216 234.47 2436.30 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Tubb2b ENSMUSG00000045136 228.27 2371.88 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
29. Tmsb4x ENSMUSG00000049775 214.18 2225.47 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
30. Eif4g2 ENSMUSG00000005610 212.49 2207.91 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Rpl4 ENSMUSG00000032399 211.93 2202.09 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Hba-x ENSMUSG00000055609 207.98 2161.05 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
33. Hsp90aa1 ENSMUSG00000021270 205.73 2137.67 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
34. Tuba1a ENSMUSG00000072235 198.40 2061.51 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
35. mt-Nd5 ENSMUSG00000064367 196.15 2038.13 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
36. Ran ENSMUSG00000029430 195.58 2032.21 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
37. Rps26 ENSMUSG00000025362 188.82 1961.97 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
38. Ybx1 ENSMUSG00000028639 186.56 1938.48 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
39. Rpl23 ENSMUSG00000071415 186.00 1932.66 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. H19 ENSMUSG00000000031 182.62 1897.54 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
41. Atp5g3 ENSMUSG00000018770 179.24 1862.42 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Hsp90ab1 ENSMUSG00000023944 174.73 1815.56 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
43. Hnrnpc ENSMUSG00000060373 171.91 1786.26 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Rrm2 ENSMUSG00000020649 162.89 1692.54 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
45. Eif5a ENSMUSG00000078812 162.33 1686.72 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
46. Banf1 ENSMUSG00000024844 161.76 1680.79 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
47. Chchd2 ENSMUSG00000070493 161.76 1680.79 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Rps20 ENSMUSG00000028234 157.82 1639.86 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Vim ENSMUSG00000026728 153.87 1598.81 vimentin [Source:MGI Symbol;Acc:MGI:98932]
50. Rps4x ENSMUSG00000031320 149.93 1557.87 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
51. Eef1b2 ENSMUSG00000025967 143.73 1493.45 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Rplp1 ENSMUSG00000007892 135.27 1405.55 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
53. Fkbp1a ENSMUSG00000032966 134.71 1399.73 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Set ENSMUSG00000054766 134.15 1393.91 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
55. Stmn1 ENSMUSG00000028832 133.58 1387.99 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
56. Map1b ENSMUSG00000052727 133.02 1382.17 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
57. Paics ENSMUSG00000029247 132.46 1376.35 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
58. Rpl37 ENSMUSG00000041841 129.07 1341.12 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
59. Hbb-bh1 ENSMUSG00000052217 127.95 1329.49 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
60. Rps5 ENSMUSG00000012848 127.95 1329.49 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
61. Hmgn1 ENSMUSG00000040681 125.69 1306.00 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
62. U2af2 ENSMUSG00000030435 125.69 1306.00 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
63. Gm14303 ENSMUSG00000081344 124.56 1294.26 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
64. Hba-a2 ENSMUSG00000069917 123.44 1282.62 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
65. Ywhae ENSMUSG00000020849 120.06 1247.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
66. Pcbp1 ENSMUSG00000051695 117.80 1224.02 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
67. mt-Rnr1 ENSMUSG00000064337 117.80 1224.02 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
68. Gm5805 ENSMUSG00000061848 116.67 1212.28 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
69. Rps3a1 ENSMUSG00000028081 114.98 1194.72 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
70. Pabpc1 ENSMUSG00000022283 113.86 1183.08 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Basp1 ENSMUSG00000045763 111.04 1153.78 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
72. Ldha ENSMUSG00000063229 109.91 1142.04 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
73. Marcksl1 ENSMUSG00000047945 109.91 1142.04 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
74. Anp32b ENSMUSG00000028333 108.78 1130.30 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
75. Hnrnpa2b1 ENSMUSG00000004980 108.22 1124.48 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
76. Rpl32 ENSMUSG00000057841 108.22 1124.48 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
77. Sub1 ENSMUSG00000022205 108.22 1124.48 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
78. Ywhab ENSMUSG00000018326 107.65 1118.56 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
79. Marcks ENSMUSG00000069662 106.53 1106.92 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
80. Grb10 ENSMUSG00000020176 105.40 1095.18 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
81. Igf2 ENSMUSG00000048583 105.40 1095.18 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
82. Ccnd2 ENSMUSG00000000184 103.71 1077.62 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
83. Srsf3 ENSMUSG00000071172 102.02 1060.06 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
84. Rps9 ENSMUSG00000006333 96.95 1007.38 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
85. Hnrnph1 ENSMUSG00000007850 96.38 1001.45 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
86. Ddx5 ENSMUSG00000020719 95.82 995.63 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
87. Slc25a5 ENSMUSG00000016319 95.82 995.63 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
88. Crabp1 ENSMUSG00000032291 94.69 983.89 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
89. Cdkn1c ENSMUSG00000037664 93.56 972.15 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
90. Gm10073 ENSMUSG00000060019 90.75 942.95 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
91. Hnrnpa0 ENSMUSG00000007836 90.75 942.95 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
92. Ngfrap1 90.75 942.95 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
93. Rpl39-ps ENSMUSG00000036305 90.75 942.95 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
94. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 90.75 942.95 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
95. Cox8a ENSMUSG00000035885 90.18 937.03 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
96. Ywhaq ENSMUSG00000076432 90.18 937.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
97. Gm8292 ENSMUSG00000100215 89.62 931.21 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
98. Trim28 ENSMUSG00000005566 88.49 919.47 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
99. Son ENSMUSG00000022961 87.93 913.65 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
100. Rpl8 ENSMUSG00000003970 87.36 907.73 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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