Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s10.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2661.66 27653.89 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2231.08 23180.28 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Co2 ENSMUSG00000064354 2071.22 21519.38 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. Ptma ENSMUSG00000026238 1967.37 20440.41 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd1 ENSMUSG00000064341 1907.86 19822.12 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1802.84 18730.99 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1248.57 12972.29 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Hbb-y ENSMUSG00000052187 995.35 10341.40 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
9. mt-Rnr2 ENSMUSG00000064339 994.19 10329.35 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. Eef1a1 ENSMUSG00000037742 731.64 7601.53 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Co3 ENSMUSG00000064358 661.62 6874.04 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Nd3 ENSMUSG00000064360 625.45 6498.25 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Hba-a1 ENSMUSG00000069919 497.09 5164.62 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
14. mt-Nd2 ENSMUSG00000064345 423.58 4400.88 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Actb ENSMUSG00000029580 415.41 4315.99 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Hba-x ENSMUSG00000055609 403.74 4194.74 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
17. Tubb2b ENSMUSG00000045136 367.57 3818.95 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
18. Gm13340 ENSMUSG00000083563 337.23 3503.72 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Rpsa ENSMUSG00000032518 333.73 3467.36 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Mdk ENSMUSG00000027239 315.06 3273.38 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Hbb-bh1 ENSMUSG00000052217 310.39 3224.86 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
22. Ubb ENSMUSG00000019505 284.72 2958.16 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Npm1 ENSMUSG00000057113 276.55 2873.28 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Ybx1 ENSMUSG00000028639 263.72 2739.98 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
25. Tuba1b ENSMUSG00000023004 262.55 2727.82 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Tubb5 ENSMUSG00000001525 247.38 2570.21 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Tpt1 ENSMUSG00000060126 246.21 2558.05 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Tuba1a ENSMUSG00000072235 240.38 2497.48 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
29. Set ENSMUSG00000054766 233.38 2424.75 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
30. Cfl1 ENSMUSG00000056201 231.04 2400.44 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
31. Hba-a2 ENSMUSG00000069917 231.04 2400.44 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
32. Tmsb4x ENSMUSG00000049775 225.21 2339.87 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
33. Hsp90aa1 ENSMUSG00000021270 217.04 2254.98 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
34. Crabp1 ENSMUSG00000032291 215.87 2242.83 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
35. Nedd4 ENSMUSG00000032216 215.87 2242.83 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
36. Ran ENSMUSG00000029430 208.87 2170.10 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
37. Eif4g2 ENSMUSG00000005610 205.37 2133.74 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Rpl4 ENSMUSG00000032399 200.70 2085.22 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Hsp90ab1 ENSMUSG00000023944 198.37 2061.01 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Chchd2 ENSMUSG00000070493 197.20 2048.85 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. mt-Nd5 ENSMUSG00000064367 180.87 1879.19 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
42. Pkm ENSMUSG00000032294 179.70 1867.03 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
43. Atp5g3 ENSMUSG00000018770 178.53 1854.88 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. H19 ENSMUSG00000000031 170.37 1770.10 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
45. Rrm2 ENSMUSG00000020649 169.20 1757.94 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
46. Vim ENSMUSG00000026728 168.03 1745.78 vimentin [Source:MGI Symbol;Acc:MGI:98932]
47. Hnrnpc ENSMUSG00000060373 164.53 1709.42 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Rps26 ENSMUSG00000025362 164.53 1709.42 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Rps4x ENSMUSG00000031320 164.53 1709.42 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
50. Malat1 ENSMUSG00000092341 161.03 1673.06 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
51. Paics ENSMUSG00000029247 152.86 1588.17 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
52. Gm10800 ENSMUSG00000075014 149.36 1551.81 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
53. Banf1 ENSMUSG00000024844 147.03 1527.60 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
54. Rplp1 ENSMUSG00000007892 144.69 1503.29 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
55. Rps20 ENSMUSG00000028234 144.69 1503.29 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
56. Rpl23 ENSMUSG00000071415 143.53 1491.24 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
57. Eif5a ENSMUSG00000078812 142.36 1479.08 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
58. Gm14303 ENSMUSG00000081344 140.03 1454.87 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
59. Pcbp1 ENSMUSG00000051695 138.86 1442.72 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
60. Map1b ENSMUSG00000052727 129.52 1345.68 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
61. Rpl32 ENSMUSG00000057841 129.52 1345.68 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
62. Zic1 ENSMUSG00000032368 129.52 1345.68 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
63. U2af2 ENSMUSG00000030435 126.02 1309.31 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
64. Eef1b2 ENSMUSG00000025967 124.86 1297.26 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
65. Marcks ENSMUSG00000069662 123.69 1285.10 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
66. Ywhae ENSMUSG00000020849 120.19 1248.74 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
67. Rps5 ENSMUSG00000012848 119.02 1236.58 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Rpl18a ENSMUSG00000045128 117.86 1224.53 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
69. Rpl37 ENSMUSG00000041841 117.86 1224.53 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
70. Hnrnpa2b1 ENSMUSG00000004980 116.69 1212.38 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
71. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 116.69 1212.38 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
72. Ndufa12 ENSMUSG00000020022 115.52 1200.22 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
73. Fkbp1a ENSMUSG00000032966 114.35 1188.06 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
74. Cdkn1c ENSMUSG00000037664 108.52 1127.49 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
75. Hmgn1 ENSMUSG00000040681 108.52 1127.49 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
76. Hnrnpa0 ENSMUSG00000007836 107.35 1115.34 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
77. Stmn1 ENSMUSG00000028832 107.35 1115.34 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
78. Anp32b ENSMUSG00000028333 106.19 1103.28 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
79. Ddx5 ENSMUSG00000020719 103.85 1078.97 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
80. Hnrnpk ENSMUSG00000021546 102.69 1066.92 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
81. Igf2 ENSMUSG00000048583 102.69 1066.92 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
82. Ldha ENSMUSG00000063229 102.69 1066.92 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
83. Marcksl1 ENSMUSG00000047945 101.52 1054.76 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
84. Rpl41 ENSMUSG00000093674 101.52 1054.76 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
85. Pabpc1 ENSMUSG00000022283 98.02 1018.40 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
86. Sox2 ENSMUSG00000074637 98.02 1018.40 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
87. Hnrnpdl ENSMUSG00000029328 95.68 994.09 heterogeneous nuclear ribonucleoprotein D-like [Source:MGI Symbol;Acc:MGI:1355299]
88. Morf4l1 ENSMUSG00000062270 95.68 994.09 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
89. Cd24a ENSMUSG00000047139 94.52 982.04 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
90. Rpl39-ps ENSMUSG00000036305 94.52 982.04 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
91. mt-Rnr1 ENSMUSG00000064337 93.35 969.88 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
92. Basp1 ENSMUSG00000045763 92.18 957.72 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
93. Cdk4 ENSMUSG00000006728 92.18 957.72 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
94. Serbp1 ENSMUSG00000036371 92.18 957.72 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
95. Rpl26 ENSMUSG00000060938 91.02 945.67 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
96. H3f3b ENSMUSG00000016559 89.85 933.52 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
97. Grb10 ENSMUSG00000020176 88.68 921.36 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
98. Cox8a ENSMUSG00000035885 87.52 909.31 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
99. Tmpo ENSMUSG00000019961 87.52 909.31 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
100. Top2a ENSMUSG00000020914 87.52 909.31 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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