Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s6.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4614.18 47936.70 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 3281.57 34092.22 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 2871.18 29828.68 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 1813.70 18842.52 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1671.53 17365.52 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1578.54 16399.45 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1470.18 15273.70 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Co1 ENSMUSG00000064351 908.39 9437.26 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 833.07 8654.76 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Hbb-y ENSMUSG00000052187 726.25 7545.01 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. mt-Nd5 ENSMUSG00000064367 637.10 6618.83 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Actb ENSMUSG00000029580 557.94 5796.44 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Co3 ENSMUSG00000064358 488.01 5069.93 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Eef1a1 ENSMUSG00000037742 439.59 4566.90 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Nd3 ENSMUSG00000064360 409.62 4255.54 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Hba-a1 ENSMUSG00000069919 403.47 4191.65 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
17. Mdk ENSMUSG00000027239 388.87 4039.97 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Gm13340 ENSMUSG00000083563 360.44 3744.61 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. mt-Rnr1 ENSMUSG00000064337 332.00 3449.15 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Hba-x ENSMUSG00000055609 315.86 3281.47 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. Npm1 ENSMUSG00000057113 304.33 3161.68 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tuba1b ENSMUSG00000023004 288.96 3002.00 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Tubb5 ENSMUSG00000001525 288.96 3002.00 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Tuba1a ENSMUSG00000072235 277.44 2882.32 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
25. Rpsa ENSMUSG00000032518 275.13 2858.32 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Rrm2 ENSMUSG00000020649 274.36 2850.33 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
27. Pkm ENSMUSG00000032294 272.82 2834.33 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Hbb-bh1 ENSMUSG00000052217 272.06 2826.43 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
29. Gm10800 ENSMUSG00000075014 243.62 2530.97 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
30. Tubb2b ENSMUSG00000045136 236.70 2459.08 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
31. Nedd4 ENSMUSG00000032216 232.09 2411.18 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Ybx1 ENSMUSG00000028639 215.95 2243.50 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
33. Crabp1 ENSMUSG00000032291 214.42 2227.61 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
34. Ubb ENSMUSG00000019505 212.11 2203.61 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Hnrnpc ENSMUSG00000060373 209.81 2179.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Cfl1 ENSMUSG00000056201 209.04 2171.72 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
37. Eif4g2 ENSMUSG00000005610 209.04 2171.72 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Set ENSMUSG00000054766 206.73 2147.72 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
39. Tpt1 ENSMUSG00000060126 198.28 2059.93 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Rpl4 ENSMUSG00000032399 186.75 1940.15 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Atp5g3 ENSMUSG00000018770 183.68 1908.25 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Hba-a2 ENSMUSG00000069917 178.30 1852.36 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
43. Hsp90ab1 ENSMUSG00000023944 175.22 1820.36 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
44. Paics ENSMUSG00000029247 172.92 1796.47 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
45. Banf1 ENSMUSG00000024844 169.84 1764.47 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
46. Chchd2 ENSMUSG00000070493 169.84 1764.47 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Eif5a ENSMUSG00000078812 162.16 1684.68 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Hsp90aa1 ENSMUSG00000021270 162.16 1684.68 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Ndufa12 ENSMUSG00000020022 159.85 1660.68 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
50. Ran ENSMUSG00000029430 154.47 1604.79 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
51. H19 ENSMUSG00000000031 152.17 1580.89 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
52. Rpl23 ENSMUSG00000071415 146.02 1517.00 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Fkbp1a ENSMUSG00000032966 144.48 1501.00 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Rps20 ENSMUSG00000028234 138.33 1437.11 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Sox2 ENSMUSG00000074637 135.26 1405.22 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
56. Pcbp1 ENSMUSG00000051695 132.19 1373.32 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
57. Map1b ENSMUSG00000052727 129.88 1349.32 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
58. Rps26 ENSMUSG00000025362 129.11 1341.32 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
59. Igf2 ENSMUSG00000048583 126.81 1317.43 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
60. Tmsb4x ENSMUSG00000049775 126.81 1317.43 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
61. Grb10 ENSMUSG00000020176 122.19 1269.43 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
62. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 122.19 1269.43 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
63. Rps4x ENSMUSG00000031320 118.35 1229.54 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Eef1b2 ENSMUSG00000025967 117.58 1221.54 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
65. U2af2 ENSMUSG00000030435 117.58 1221.54 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
66. Top2a ENSMUSG00000020914 116.81 1213.54 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
67. Pabpc1 ENSMUSG00000022283 116.05 1205.64 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
68. Rps5 ENSMUSG00000012848 116.05 1205.64 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Rpl18a ENSMUSG00000045128 115.28 1197.64 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
70. Marcks ENSMUSG00000069662 114.51 1189.64 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
71. Malat1 ENSMUSG00000092341 112.97 1173.65 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
72. Myl6 ENSMUSG00000090841 111.44 1157.75 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
73. Rplp1 ENSMUSG00000007892 109.90 1141.75 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
74. Anp32b ENSMUSG00000028333 107.59 1117.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
75. Vim ENSMUSG00000026728 107.59 1117.75 vimentin [Source:MGI Symbol;Acc:MGI:98932]
76. Ccnd2 ENSMUSG00000000184 105.29 1093.86 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
77. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 102.98 1069.86 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
78. Cox8a ENSMUSG00000035885 102.21 1061.86 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
79. Gm14303 ENSMUSG00000081344 102.21 1061.86 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
80. Gm17132 ENSMUSG00000061331 101.44 1053.86 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
81. Hnrnpa2b1 ENSMUSG00000004980 101.44 1053.86 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
82. Lamp1 ENSMUSG00000031447 101.44 1053.86 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
83. Sub1 ENSMUSG00000022205 98.37 1021.97 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
84. Fscn1 ENSMUSG00000029581 96.83 1005.97 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
85. Slc25a5 ENSMUSG00000016319 96.06 997.97 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
86. Ldha ENSMUSG00000063229 95.30 990.07 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
87. Zic1 ENSMUSG00000032368 95.30 990.07 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
88. Kpnb1 ENSMUSG00000001440 94.53 982.07 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
89. Morf4l1 ENSMUSG00000062270 94.53 982.07 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
90. Trim28 ENSMUSG00000005566 93.76 974.07 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
91. Cdk4 ENSMUSG00000006728 91.45 950.07 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
92. Hnrnpa0 ENSMUSG00000007836 91.45 950.07 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
93. Ywhae ENSMUSG00000020849 91.45 950.07 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
94. Ddx39b ENSMUSG00000019432 89.92 934.18 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
95. Rps3a1 ENSMUSG00000028081 89.15 926.18 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
96. Trp53i11 ENSMUSG00000068735 89.15 926.18 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
97. 2810417H13Rik 88.38 918.18 RIKEN cDNA 2810417H13 gene
98. Psat1 ENSMUSG00000024640 88.38 918.18 phosphoserine aminotransferase 1 [Source:MGI Symbol;Acc:MGI:2183441]
99. Rpl37 ENSMUSG00000041841 88.38 918.18 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
100. Hmgn1 ENSMUSG00000040681 87.61 910.18 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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