Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s5.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 5227.06 54305.77 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 3161.78 32848.85 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 2877.01 29890.27 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 1916.75 19913.79 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1649.95 17141.91 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1445.60 15018.85 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1187.32 12335.49 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Co1 ENSMUSG00000064351 921.48 9573.58 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Hbb-y ENSMUSG00000052187 872.28 9062.42 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd2 ENSMUSG00000064345 859.98 8934.64 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Nd5 ENSMUSG00000064367 749.29 7784.64 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Actb ENSMUSG00000029580 617.79 6418.44 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Hba-a1 ENSMUSG00000069919 521.29 5415.87 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
14. Hba-x ENSMUSG00000055609 511.83 5317.58 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
15. Eef1a1 ENSMUSG00000037742 471.14 4894.84 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Mdk ENSMUSG00000027239 407.76 4236.36 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. mt-Nd3 ENSMUSG00000064360 375.59 3902.14 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
18. mt-Co3 ENSMUSG00000064358 365.18 3793.98 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. mt-Rnr1 ENSMUSG00000064337 316.93 3292.70 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Gm13340 ENSMUSG00000083563 306.53 3184.65 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Crabp1 ENSMUSG00000032291 301.80 3135.51 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
22. Rrm2 ENSMUSG00000020649 298.96 3106.00 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
23. Rpsa ENSMUSG00000032518 290.44 3017.48 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Hbb-bh1 ENSMUSG00000052217 286.66 2978.21 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
25. Tuba1b ENSMUSG00000023004 282.88 2938.94 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Npm1 ENSMUSG00000057113 277.20 2879.93 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Nedd4 ENSMUSG00000032216 261.12 2712.87 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Pkm ENSMUSG00000032294 251.66 2614.58 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Rpl18a ENSMUSG00000045128 239.36 2486.80 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
30. Hba-a2 ENSMUSG00000069917 237.46 2467.06 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
31. Eif4g2 ENSMUSG00000005610 224.22 2329.50 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Tuba1a ENSMUSG00000072235 223.27 2319.63 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
33. Tubb5 ENSMUSG00000001525 218.54 2270.49 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Hsp90ab1 ENSMUSG00000023944 209.08 2172.21 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Tubb2b ENSMUSG00000045136 207.19 2152.57 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
36. Gm10800 ENSMUSG00000075014 205.30 2132.93 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
37. Set ENSMUSG00000054766 202.46 2103.43 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Cfl1 ENSMUSG00000056201 200.57 2083.79 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
39. H19 ENSMUSG00000000031 195.84 2034.65 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
40. Ybx1 ENSMUSG00000028639 195.84 2034.65 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Tpt1 ENSMUSG00000060126 193.95 2015.01 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Banf1 ENSMUSG00000024844 193.00 2005.15 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
43. Hnrnpc ENSMUSG00000060373 193.00 2005.15 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Paics ENSMUSG00000029247 191.11 1985.51 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
45. Ubb ENSMUSG00000019505 187.32 1946.13 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
46. Rpl4 ENSMUSG00000032399 181.65 1887.23 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
47. Ran ENSMUSG00000029430 169.35 1759.44 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
48. U2af2 ENSMUSG00000030435 169.35 1759.44 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
49. Atp5g3 ENSMUSG00000018770 159.89 1661.15 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Hsp90aa1 ENSMUSG00000021270 149.48 1553.00 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Chchd2 ENSMUSG00000070493 148.53 1543.13 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
52. Fkbp1a ENSMUSG00000032966 143.80 1493.99 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
53. Eif5a ENSMUSG00000078812 140.97 1464.59 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
54. Rps4x ENSMUSG00000031320 140.97 1464.59 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. Myl6 ENSMUSG00000090841 140.02 1454.72 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
56. Eef1b2 ENSMUSG00000025967 136.23 1415.34 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
57. Grb10 ENSMUSG00000020176 134.34 1395.71 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
58. Sox2 ENSMUSG00000074637 133.40 1385.94 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
59. Stmn1 ENSMUSG00000028832 130.56 1356.43 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
60. Rpl23 ENSMUSG00000071415 129.61 1346.56 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
61. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 129.61 1346.56 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
62. Pabpc1 ENSMUSG00000022283 126.77 1317.06 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
63. Pcbp1 ENSMUSG00000051695 124.88 1297.42 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
64. Rps26 ENSMUSG00000025362 120.15 1248.28 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
65. Rps5 ENSMUSG00000012848 119.21 1238.51 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
66. Map1b ENSMUSG00000052727 118.26 1228.64 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
67. Malat1 ENSMUSG00000092341 116.37 1209.01 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
68. Rps20 ENSMUSG00000028234 114.47 1189.27 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
69. Trp53i11 ENSMUSG00000068735 114.47 1189.27 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
70. Hnrnpa2b1 ENSMUSG00000004980 111.64 1159.87 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
71. Msi1 ENSMUSG00000054256 110.69 1150.00 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
72. Top2a ENSMUSG00000020914 110.69 1150.00 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
73. Trim28 ENSMUSG00000005566 110.69 1150.00 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
74. Tmsb4x ENSMUSG00000049775 109.74 1140.13 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
75. Lamp1 ENSMUSG00000031447 108.80 1130.36 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
76. Cox8a ENSMUSG00000035885 104.07 1081.22 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
77. Anp32b ENSMUSG00000028333 102.18 1061.58 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
78. Gm17132 ENSMUSG00000061331 102.18 1061.58 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
79. Ywhab ENSMUSG00000018326 102.18 1061.58 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
80. Ywhae ENSMUSG00000020849 101.23 1051.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
81. Ndufc2 ENSMUSG00000030647 100.28 1041.84 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
82. Sub1 ENSMUSG00000022205 100.28 1041.84 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
83. Igf2 ENSMUSG00000048583 97.45 1012.44 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
84. Marcksl1 ENSMUSG00000047945 97.45 1012.44 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
85. Ndufa12 ENSMUSG00000020022 97.45 1012.44 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
86. Plagl1 ENSMUSG00000019817 97.45 1012.44 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
87. Vim ENSMUSG00000026728 94.61 982.94 vimentin [Source:MGI Symbol;Acc:MGI:98932]
88. Gm5805 ENSMUSG00000061848 93.66 973.07 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
89. Ldha ENSMUSG00000063229 93.66 973.07 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
90. Marcks ENSMUSG00000069662 92.72 963.30 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
91. Hmgn1 ENSMUSG00000040681 91.77 953.43 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
92. Rplp1 ENSMUSG00000007892 91.77 953.43 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
93. Rps3a1 ENSMUSG00000028081 91.77 953.43 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
94. Zic1 ENSMUSG00000032368 91.77 953.43 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
95. Tubb3 ENSMUSG00000062380 90.82 943.56 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
96. Ddx5 ENSMUSG00000020719 89.88 933.79 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
97. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 88.93 923.93 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
98. Morf4l1 ENSMUSG00000062270 87.98 914.06 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
99. Ckb ENSMUSG00000001270 87.04 904.29 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
100. Tmpo ENSMUSG00000019961 86.09 894.42 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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