Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s4.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4592.33 47718.92 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 4061.87 42206.91 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 2589.83 26910.94 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 1631.46 16952.51 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1520.52 15799.73 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1516.79 15760.97 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1132.70 11769.89 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd5 ENSMUSG00000064367 1114.06 11576.20 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 996.59 10355.57 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Hbb-y ENSMUSG00000052187 925.74 9619.37 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. mt-Co1 ENSMUSG00000064351 832.51 8650.62 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. Hba-a1 ENSMUSG00000069919 552.83 5744.46 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
13. Actb ENSMUSG00000029580 547.24 5686.37 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Hba-x ENSMUSG00000055609 531.39 5521.68 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
15. mt-Rnr1 ENSMUSG00000064337 502.49 5221.38 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
16. mt-Co3 ENSMUSG00000064358 459.61 4775.81 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Eef1a1 ENSMUSG00000037742 437.23 4543.26 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Mdk ENSMUSG00000027239 380.36 3952.32 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Hbb-bh1 ENSMUSG00000052217 376.63 3913.56 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
20. mt-Nd3 ENSMUSG00000064360 357.06 3710.21 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
21. Gm10800 ENSMUSG00000075014 356.12 3700.44 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Rpsa ENSMUSG00000032518 317.90 3303.30 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Gm13340 ENSMUSG00000083563 316.97 3293.64 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Npm1 ENSMUSG00000057113 302.05 3138.60 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Tuba1b ENSMUSG00000023004 301.12 3128.94 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Pkm ENSMUSG00000032294 296.46 3080.52 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Crabp1 ENSMUSG00000032291 290.87 3022.43 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
28. Rrm2 ENSMUSG00000020649 247.05 2567.10 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
29. Hba-a2 ENSMUSG00000069917 246.12 2557.43 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
30. Nedd4 ENSMUSG00000032216 237.73 2470.25 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Eif4g2 ENSMUSG00000005610 229.34 2383.07 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Tubb5 ENSMUSG00000001525 227.47 2363.64 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Tuba1a ENSMUSG00000072235 219.08 2276.46 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
34. Hsp90ab1 ENSMUSG00000023944 218.15 2266.80 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Tubb2b ENSMUSG00000045136 212.56 2208.71 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
36. Ubb ENSMUSG00000019505 212.56 2208.71 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
37. H19 ENSMUSG00000000031 202.30 2102.10 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
38. Cfl1 ENSMUSG00000056201 189.25 1966.50 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
39. Tpt1 ENSMUSG00000060126 184.59 1918.08 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Set ENSMUSG00000054766 183.66 1908.41 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
41. Hnrnpc ENSMUSG00000060373 182.72 1898.64 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
42. U2af2 ENSMUSG00000030435 176.20 1830.90 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
43. Banf1 ENSMUSG00000024844 167.81 1743.71 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Ybx1 ENSMUSG00000028639 162.21 1685.52 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Hsp90aa1 ENSMUSG00000021270 161.28 1675.86 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
46. Paics ENSMUSG00000029247 155.69 1617.78 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
47. Gm14303 ENSMUSG00000081344 149.16 1549.92 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
48. Ndufa12 ENSMUSG00000020022 148.23 1540.26 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
49. Rpl23 ENSMUSG00000071415 148.23 1540.26 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
50. Rplp1 ENSMUSG00000007892 148.23 1540.26 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
51. Rps20 ENSMUSG00000028234 148.23 1540.26 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Eif5a ENSMUSG00000078812 146.37 1520.93 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
53. Ran ENSMUSG00000029430 143.57 1491.84 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Eef1b2 ENSMUSG00000025967 142.64 1482.17 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Rpl4 ENSMUSG00000032399 142.64 1482.17 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
56. Chchd2 ENSMUSG00000070493 137.98 1433.75 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
57. Sox2 ENSMUSG00000074637 135.18 1404.66 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
58. Grb10 ENSMUSG00000020176 133.31 1385.22 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
59. Igf2 ENSMUSG00000048583 131.45 1365.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
60. Tmsb4x ENSMUSG00000049775 130.52 1356.23 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
61. Map1b ENSMUSG00000052727 128.65 1336.80 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
62. Pcbp1 ENSMUSG00000051695 127.72 1327.14 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
63. Rps26 ENSMUSG00000025362 126.79 1317.48 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
64. Adprh ENSMUSG00000002844 122.13 1269.05 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
65. Atp5g3 ENSMUSG00000018770 117.47 1220.63 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
66. Malat1 ENSMUSG00000092341 116.53 1210.86 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
67. Zic1 ENSMUSG00000032368 116.53 1210.86 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
68. Rps5 ENSMUSG00000012848 114.67 1191.54 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Rps4x ENSMUSG00000031320 111.87 1162.44 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
70. Lamp1 ENSMUSG00000031447 110.94 1152.78 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
71. Ldha ENSMUSG00000063229 110.94 1152.78 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
72. Rpl18a ENSMUSG00000045128 110.01 1143.11 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
73. Myl6 ENSMUSG00000090841 109.07 1133.35 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
74. Gm17132 ENSMUSG00000061331 108.14 1123.68 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
75. Top2a ENSMUSG00000020914 108.14 1123.68 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
76. Cdk4 ENSMUSG00000006728 107.21 1114.02 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. Fkbp1a ENSMUSG00000032966 106.28 1104.36 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
78. Hbb-bt ENSMUSG00000073940 106.28 1104.36 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
79. Marcks ENSMUSG00000069662 105.35 1094.69 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
80. Plagl1 ENSMUSG00000019817 104.41 1084.92 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
81. Trim28 ENSMUSG00000005566 102.55 1065.60 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
82. Tecr ENSMUSG00000031708 101.62 1055.93 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
83. Anp32b ENSMUSG00000028333 100.68 1046.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.68 1046.17 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
85. Marcksl1 ENSMUSG00000047945 99.75 1036.50 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
86. Trp53i11 ENSMUSG00000068735 99.75 1036.50 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
87. Ywhab ENSMUSG00000018326 99.75 1036.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
88. Ywhae ENSMUSG00000020849 99.75 1036.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
89. Pabpc1 ENSMUSG00000022283 96.02 997.74 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
90. Hnrnpa2b1 ENSMUSG00000004980 95.09 988.08 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
91. Vim ENSMUSG00000026728 94.16 978.42 vimentin [Source:MGI Symbol;Acc:MGI:98932]
92. Fscn1 ENSMUSG00000029581 93.23 968.75 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
93. Sub1 ENSMUSG00000022205 93.23 968.75 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
94. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 91.36 949.32 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
95. Msi1 ENSMUSG00000054256 90.43 939.66 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
96. Scd2 ENSMUSG00000025203 90.43 939.66 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
97. Rps9 ENSMUSG00000006333 89.50 929.99 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
98. Morf4l1 ENSMUSG00000062270 87.63 910.56 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
99. Slc25a5 ENSMUSG00000016319 87.63 910.56 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
100. Gm26924 Gm26924 85.77 891.24
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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