Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s3.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 5228.15 54317.37 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 4303.92 44715.17 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 1993.35 20709.72 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Atp6 ENSMUSG00000064357 1576.28 16376.61 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd4 ENSMUSG00000064363 1525.37 15847.69 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 1523.41 15827.33 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co2 ENSMUSG00000064354 1206.20 12531.70 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 924.23 9602.20 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 789.12 8198.49 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd5 ENSMUSG00000064367 701.00 7282.97 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Rnr1 ENSMUSG00000064337 661.84 6876.12 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
12. Hbb-y ENSMUSG00000052187 626.59 6509.90 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
13. Actb ENSMUSG00000029580 491.49 5106.29 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Co3 ENSMUSG00000064358 487.57 5065.56 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Eef1a1 ENSMUSG00000037742 467.99 4862.14 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Tuba1b ENSMUSG00000023004 332.88 3458.43 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
17. mt-Nd3 ENSMUSG00000064360 317.21 3295.62 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
18. Rpsa ENSMUSG00000032518 307.42 3193.91 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Npm1 ENSMUSG00000057113 303.51 3153.29 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Pkm ENSMUSG00000032294 301.55 3132.93 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
21. Gm13340 ENSMUSG00000083563 295.67 3071.84 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Hba-x ENSMUSG00000055609 270.22 2807.43 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
23. Rrm2 ENSMUSG00000020649 270.22 2807.43 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
24. Nedd4 ENSMUSG00000032216 268.26 2787.06 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tubb5 ENSMUSG00000001525 252.60 2624.36 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Ndufc2 ENSMUSG00000030647 250.64 2604.00 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
27. Mdk ENSMUSG00000027239 248.68 2583.64 midkine [Source:MGI Symbol;Acc:MGI:96949]
28. H19 ENSMUSG00000000031 236.93 2461.56 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
29. Set ENSMUSG00000054766 234.97 2441.20 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
30. Hba-a1 ENSMUSG00000069919 233.01 2420.84 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
31. Hbb-bh1 ENSMUSG00000052217 213.43 2217.41 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
32. Tubb2b ENSMUSG00000045136 211.48 2197.15 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
33. Tuba1a ENSMUSG00000072235 207.56 2156.43 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
34. Hsp90ab1 ENSMUSG00000023944 203.64 2115.70 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Hnrnpc ENSMUSG00000060373 199.73 2075.08 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Ybx1 ENSMUSG00000028639 197.77 2054.71 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
37. Cfl1 ENSMUSG00000056201 195.81 2034.35 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
38. Eif4g2 ENSMUSG00000005610 195.81 2034.35 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Ubb ENSMUSG00000019505 193.85 2013.99 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
40. Rpl4 ENSMUSG00000032399 191.89 1993.62 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Crabp1 ENSMUSG00000032291 187.98 1953.00 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
42. Tpt1 ENSMUSG00000060126 187.98 1953.00 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
43. Eif5a ENSMUSG00000078812 182.10 1891.91 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Banf1 ENSMUSG00000024844 178.19 1851.29 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
45. U2af2 ENSMUSG00000030435 176.23 1830.93 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
46. Ndufa12 ENSMUSG00000020022 174.27 1810.56 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
47. Chchd2 ENSMUSG00000070493 156.65 1627.50 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Tmsb4x ENSMUSG00000049775 156.65 1627.50 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
49. Eef1b2 ENSMUSG00000025967 152.73 1586.77 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. Gm14303 ENSMUSG00000081344 152.73 1586.77 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
51. Hsp90aa1 ENSMUSG00000021270 150.77 1566.41 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Rpl23 ENSMUSG00000071415 150.77 1566.41 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Rpl18a ENSMUSG00000045128 148.82 1546.15 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
54. Malat1 ENSMUSG00000092341 146.86 1525.79 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
55. Gm10800 ENSMUSG00000075014 142.94 1485.06 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
56. Atp5g3 ENSMUSG00000018770 140.98 1464.70 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
57. Ldha ENSMUSG00000063229 139.03 1444.44 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
58. Ran ENSMUSG00000029430 139.03 1444.44 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
59. Myl6 ENSMUSG00000090841 135.11 1403.71 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
60. Paics ENSMUSG00000029247 135.11 1403.71 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. Map1b ENSMUSG00000052727 127.28 1322.36 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
62. Rps20 ENSMUSG00000028234 125.32 1302.00 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
63. Rps5 ENSMUSG00000012848 125.32 1302.00 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
64. Sox2 ENSMUSG00000074637 125.32 1302.00 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
65. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 121.40 1261.27 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
66. Scd2 ENSMUSG00000025203 119.44 1240.91 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
67. Vim ENSMUSG00000026728 119.44 1240.91 vimentin [Source:MGI Symbol;Acc:MGI:98932]
68. Rps4x ENSMUSG00000031320 115.53 1200.29 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Ywhae ENSMUSG00000020849 115.53 1200.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
70. Cdkn1c ENSMUSG00000037664 113.57 1179.92 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
71. Hba-a2 ENSMUSG00000069917 113.57 1179.92 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
72. Lamp1 ENSMUSG00000031447 113.57 1179.92 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
73. Trp53i11 ENSMUSG00000068735 113.57 1179.92 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
74. Gm5805 ENSMUSG00000061848 111.61 1159.56 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
75. Hnrnpa2b1 ENSMUSG00000004980 109.65 1139.20 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
76. Cd24a ENSMUSG00000047139 107.70 1118.94 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
77. Rplp1 ENSMUSG00000007892 105.74 1098.58 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
78. Son ENSMUSG00000022961 105.74 1098.58 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
79. Trim28 ENSMUSG00000005566 105.74 1098.58 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
80. Zic1 ENSMUSG00000032368 105.74 1098.58 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
81. Fkbp1a ENSMUSG00000032966 103.78 1078.21 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
82. Grb10 ENSMUSG00000020176 103.78 1078.21 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
83. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 103.78 1078.21 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
84. Eef2 ENSMUSG00000034994 101.82 1057.85 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
85. Igf2 ENSMUSG00000048583 101.82 1057.85 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
86. Marcksl1 ENSMUSG00000047945 101.82 1057.85 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
87. Rpl41 ENSMUSG00000093674 101.82 1057.85 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
88. Arl6ip1 ENSMUSG00000030654 99.86 1037.49 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
89. Pcbp1 ENSMUSG00000051695 99.86 1037.49 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
90. Pabpc1 ENSMUSG00000022283 97.91 1017.23 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
91. Hspe1 ENSMUSG00000073676 95.95 996.86 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
92. Kpnb1 ENSMUSG00000001440 95.95 996.86 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
93. Stmn1 ENSMUSG00000028832 95.95 996.86 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
94. Top2a ENSMUSG00000020914 95.95 996.86 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
95. Rpl32 ENSMUSG00000057841 93.99 976.50 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
96. Marcks ENSMUSG00000069662 92.03 956.14 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
97. Msi1 ENSMUSG00000054256 92.03 956.14 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
98. Ngfrap1 92.03 956.14 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
99. Sub1 ENSMUSG00000022205 92.03 956.14 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
100. Ywhab ENSMUSG00000018326 92.03 956.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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