Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s2.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4156.03 43176.10 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 3595.14 37349.14 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 2617.04 27187.87 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd1 ENSMUSG00000064341 1712.63 17792.14 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1683.90 17493.67 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Atp6 ENSMUSG00000064357 1477.78 15352.34 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1399.08 14534.74 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. Hbb-y ENSMUSG00000052187 938.14 9746.13 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
9. mt-Co1 ENSMUSG00000064351 808.22 8396.42 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd2 ENSMUSG00000064345 805.72 8370.45 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Hba-a1 ENSMUSG00000069919 678.31 7046.82 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
12. mt-Nd5 ENSMUSG00000064367 649.57 6748.24 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Gm10800 ENSMUSG00000075014 618.34 6423.80 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
14. Hba-x ENSMUSG00000055609 553.39 5749.05 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
15. mt-Nd3 ENSMUSG00000064360 497.17 5164.99 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Eef1a1 ENSMUSG00000037742 490.93 5100.17 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Actb ENSMUSG00000029580 477.19 4957.42 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
18. mt-Co3 ENSMUSG00000064358 445.96 4632.98 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Mdk ENSMUSG00000027239 434.72 4516.21 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. Hbb-bh1 ENSMUSG00000052217 415.98 4321.53 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
21. Gm13340 ENSMUSG00000083563 348.52 3620.70 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. mt-Rnr1 ENSMUSG00000064337 338.53 3516.92 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
23. Rpsa ENSMUSG00000032518 326.04 3387.16 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Cfl1 ENSMUSG00000056201 286.06 2971.82 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Pkm ENSMUSG00000032294 279.82 2906.99 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Tubb5 ENSMUSG00000001525 261.08 2712.30 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Hba-a2 ENSMUSG00000069917 259.83 2699.32 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
28. Tuba1b ENSMUSG00000023004 256.08 2660.36 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Tuba1a ENSMUSG00000072235 252.33 2621.40 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
30. Eif4g2 ENSMUSG00000005610 249.84 2595.53 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Tubb2b ENSMUSG00000045136 247.34 2569.56 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
32. Npm1 ENSMUSG00000057113 244.84 2543.59 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
33. Ubb ENSMUSG00000019505 242.34 2517.62 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Nedd4 ENSMUSG00000032216 241.09 2504.63 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. H19 ENSMUSG00000000031 228.60 2374.88 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
36. Ybx1 ENSMUSG00000028639 228.60 2374.88 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
37. Hnrnpc ENSMUSG00000060373 223.60 2322.93 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
38. Tmsb4x ENSMUSG00000049775 223.60 2322.93 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
39. Hsp90ab1 ENSMUSG00000023944 213.61 2219.15 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Crabp1 ENSMUSG00000032291 206.11 2141.23 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
41. Tpt1 ENSMUSG00000060126 206.11 2141.23 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Banf1 ENSMUSG00000024844 201.12 2089.39 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
43. Rrm2 ENSMUSG00000020649 194.87 2024.46 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
44. Rpl4 ENSMUSG00000032399 193.62 2011.48 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Eif5a ENSMUSG00000078812 173.64 1803.91 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
46. Set ENSMUSG00000054766 159.90 1661.17 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
47. Chchd2 ENSMUSG00000070493 152.40 1583.25 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Rpl23 ENSMUSG00000071415 152.40 1583.25 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
49. Rpl18a ENSMUSG00000045128 149.90 1557.28 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
50. Paics ENSMUSG00000029247 148.65 1544.29 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
51. Atp5g3 ENSMUSG00000018770 147.40 1531.31 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Ran ENSMUSG00000029430 146.15 1518.32 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Fkbp1a ENSMUSG00000032966 143.66 1492.45 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Grb10 ENSMUSG00000020176 143.66 1492.45 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
55. U2af2 ENSMUSG00000030435 143.66 1492.45 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
56. Hsp90aa1 ENSMUSG00000021270 142.41 1479.47 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. Gm17132 ENSMUSG00000061331 133.66 1388.56 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
58. Pcbp1 ENSMUSG00000051695 129.91 1349.61 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Map1b ENSMUSG00000052727 124.92 1297.77 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
60. Ldha ENSMUSG00000063229 122.42 1271.80 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
61. Ndufa12 ENSMUSG00000020022 121.17 1258.81 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
62. Myl6 ENSMUSG00000090841 117.42 1219.85 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
63. Rps26 ENSMUSG00000025362 117.42 1219.85 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
64. Trp53i11 ENSMUSG00000068735 117.42 1219.85 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
65. Rps4x ENSMUSG00000031320 116.17 1206.87 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Sox2 ENSMUSG00000074637 116.17 1206.87 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
67. Rps20 ENSMUSG00000028234 114.92 1193.88 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
68. Eef1b2 ENSMUSG00000025967 112.43 1168.01 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
69. Hnrnpa0 ENSMUSG00000007836 112.43 1168.01 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
70. Ywhae ENSMUSG00000020849 109.93 1142.04 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 108.68 1129.05 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Hnrnpa2b1 ENSMUSG00000004980 107.43 1116.07 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
73. Marcks ENSMUSG00000069662 107.43 1116.07 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
74. Msi1 ENSMUSG00000054256 107.43 1116.07 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
75. Rps5 ENSMUSG00000012848 107.43 1116.07 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
76. Rplp1 ENSMUSG00000007892 104.93 1090.10 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
77. Cox8a ENSMUSG00000035885 103.68 1077.11 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
78. Vim ENSMUSG00000026728 101.18 1051.14 vimentin [Source:MGI Symbol;Acc:MGI:98932]
79. Caprin1 ENSMUSG00000027184 99.93 1038.15 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
80. Ssbp3 ENSMUSG00000061887 99.93 1038.15 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
81. Cdk4 ENSMUSG00000006728 98.69 1025.27 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
82. Malat1 ENSMUSG00000092341 98.69 1025.27 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
83. Pabpc1 ENSMUSG00000022283 98.69 1025.27 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
84. Arl6ip1 ENSMUSG00000030654 97.44 1012.28 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
85. Gm14303 ENSMUSG00000081344 96.19 999.30 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
86. Anp32b ENSMUSG00000028333 94.94 986.31 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
87. Fscn1 ENSMUSG00000029581 94.94 986.31 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
88. Top2a ENSMUSG00000020914 94.94 986.31 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
89. Ywhab ENSMUSG00000018326 93.69 973.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
90. Ywhaq ENSMUSG00000076432 92.44 960.34 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
91. Ywhaz ENSMUSG00000022285 92.44 960.34 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
92. Cd24a ENSMUSG00000047139 91.19 947.35 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
93. Lamp1 ENSMUSG00000031447 88.69 921.38 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
94. Cdkn1c ENSMUSG00000037664 86.19 895.41 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
95. Ckb ENSMUSG00000001270 84.94 882.42 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
96. Hbb-bt ENSMUSG00000073940 84.94 882.42 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
97. Hmgn1 ENSMUSG00000040681 83.70 869.54 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
98. 2810417H13Rik 82.45 856.56 RIKEN cDNA 2810417H13 gene
99. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 82.45 856.56 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
100. Hdac2 ENSMUSG00000019777 82.45 856.56 histone deacetylase 2 [Source:MGI Symbol;Acc:MGI:1097691]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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