Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s14.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4450.06 46240.04 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3132.77 32552.24 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 2451.97 25478.13 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2313.64 24040.76 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 1925.24 20004.94 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd1 ENSMUSG00000064341 1867.16 19401.44 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co2 ENSMUSG00000064354 1804.15 18746.71 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1050.98 10920.61 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1037.69 10782.51 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 1014.06 10536.98 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Actb ENSMUSG00000029580 784.67 8153.41 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd3 ENSMUSG00000064360 636.99 6618.89 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Hbb-y ENSMUSG00000052187 523.28 5437.34 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
14. mt-Co3 ENSMUSG00000064358 485.37 5043.42 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Eef1a1 ENSMUSG00000037742 436.15 4531.98 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Gm13340 ENSMUSG00000083563 384.46 3994.88 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. H19 ENSMUSG00000000031 366.74 3810.75 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Mdk ENSMUSG00000027239 347.54 3611.25 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Tuba1a ENSMUSG00000072235 322.93 3355.53 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
20. Tubb5 ENSMUSG00000001525 321.94 3345.24 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
21. Cfl1 ENSMUSG00000056201 291.91 3033.20 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Hba-a1 ENSMUSG00000069919 284.04 2951.43 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Nedd4 ENSMUSG00000032216 269.76 2803.04 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Tuba1b ENSMUSG00000023004 259.42 2695.60 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Npm1 ENSMUSG00000057113 256.96 2670.04 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Rpsa ENSMUSG00000032518 256.96 2670.04 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Ubb ENSMUSG00000019505 255.48 2654.66 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Hba-x ENSMUSG00000055609 234.32 2434.79 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. Igf2 ENSMUSG00000048583 226.93 2358.00 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
30. Tubb2b ENSMUSG00000045136 224.47 2332.44 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
31. Ybx1 ENSMUSG00000028639 213.15 2214.82 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
32. Map1b ENSMUSG00000052727 208.23 2163.69 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
33. Hbb-bh1 ENSMUSG00000052217 203.30 2112.47 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
34. Pkm ENSMUSG00000032294 202.32 2102.28 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Eif4g2 ENSMUSG00000005610 192.48 2000.04 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Tpt1 ENSMUSG00000060126 191.49 1989.75 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. mt-Rnr1 ENSMUSG00000064337 189.03 1964.19 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
38. Tmsb4x ENSMUSG00000049775 181.65 1887.50 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
39. Fkbp1a ENSMUSG00000032966 173.77 1805.62 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
40. Hnrnpc ENSMUSG00000060373 173.77 1805.62 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Hsp90ab1 ENSMUSG00000023944 173.77 1805.62 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
42. Rpl4 ENSMUSG00000032399 171.80 1785.15 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Atp5g3 ENSMUSG00000018770 157.03 1631.68 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Hsp90aa1 ENSMUSG00000021270 156.54 1626.59 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Eif5a ENSMUSG00000078812 154.08 1601.03 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
46. Pcbp1 ENSMUSG00000051695 145.71 1514.06 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. Rrm2 ENSMUSG00000020649 143.74 1493.59 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
48. Banf1 ENSMUSG00000024844 142.76 1483.40 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
49. Cdkn1c ENSMUSG00000037664 140.30 1457.84 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
50. Rps20 ENSMUSG00000028234 138.33 1437.37 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Crabp1 ENSMUSG00000032291 137.34 1427.08 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
52. Cd24a ENSMUSG00000047139 135.37 1406.61 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
53. Grb10 ENSMUSG00000020176 134.39 1396.43 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
54. Eef1b2 ENSMUSG00000025967 130.94 1360.58 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Rpl23 ENSMUSG00000071415 129.96 1350.40 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
56. Myl6 ENSMUSG00000090841 126.51 1314.55 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
57. Tubb3 ENSMUSG00000062380 122.08 1268.52 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
58. Paics ENSMUSG00000029247 121.10 1258.34 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
59. Fscn1 ENSMUSG00000029581 118.14 1227.58 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
60. Hba-a2 ENSMUSG00000069917 117.16 1217.40 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
61. Hmga2 ENSMUSG00000056758 117.16 1217.40 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
62. Ndufa12 ENSMUSG00000020022 117.16 1217.40 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
63. Pabpc1 ENSMUSG00000022283 116.67 1212.30 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. Rpl18a ENSMUSG00000045128 115.19 1196.93 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
65. Set ENSMUSG00000054766 115.19 1196.93 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
66. Rps4x ENSMUSG00000031320 114.70 1191.83 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
67. Ran ENSMUSG00000029430 114.21 1186.74 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Chchd2 ENSMUSG00000070493 113.71 1181.55 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
69. Stmn1 ENSMUSG00000028832 111.25 1155.99 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
70. U2af2 ENSMUSG00000030435 110.76 1150.89 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
71. Ywhab ENSMUSG00000018326 108.30 1125.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
72. Basp1 ENSMUSG00000045763 107.31 1115.05 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
73. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 103.87 1079.30 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
74. Rps26 ENSMUSG00000025362 101.90 1058.83 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
75. Cox8a ENSMUSG00000035885 100.91 1048.54 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
76. Sub1 ENSMUSG00000022205 100.91 1048.54 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
77. Rplp1 ENSMUSG00000007892 100.42 1043.45 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
78. Marcks ENSMUSG00000069662 98.95 1028.18 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
79. Ywhag ENSMUSG00000051391 98.45 1022.98 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
80. Hnrnpa0 ENSMUSG00000007836 97.47 1012.80 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
81. Trim28 ENSMUSG00000005566 96.98 1007.71 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
82. Lamp1 ENSMUSG00000031447 95.01 987.24 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
83. Malat1 ENSMUSG00000092341 92.55 961.68 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
84. Marcksl1 ENSMUSG00000047945 92.05 956.48 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
85. Ywhae ENSMUSG00000020849 91.56 951.39 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
86. Ddx39b ENSMUSG00000019432 87.13 905.36 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
87. Hmgn1 ENSMUSG00000040681 87.13 905.36 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
88. Stmn2 ENSMUSG00000027500 85.65 889.98 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
89. Cdk4 ENSMUSG00000006728 85.16 884.89 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
90. Rps5 ENSMUSG00000012848 85.16 884.89 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
91. Gm14303 ENSMUSG00000081344 84.18 874.70 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
92. Hnrnpa2b1 ENSMUSG00000004980 84.18 874.70 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
93. Scd2 ENSMUSG00000025203 84.18 874.70 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
94. Adprh ENSMUSG00000002844 83.68 869.51 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
95. Eef2 ENSMUSG00000034994 83.19 864.42 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
96. Hoxc8 ENSMUSG00000001657 81.72 849.14 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
97. Vim ENSMUSG00000026728 81.72 849.14 vimentin [Source:MGI Symbol;Acc:MGI:98932]
98. Anp32b ENSMUSG00000028333 80.73 838.86 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
99. Trp53i11 ENSMUSG00000068735 80.73 838.86 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
100. Cadm1 ENSMUSG00000032076 80.24 833.76 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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