Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s13.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4808.37 49961.33 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3485.24 36213.36 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 2418.09 25125.14 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2247.73 23355.02 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1858.03 19305.84 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1780.36 18498.82 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1652.37 17168.94 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1016.84 10565.47 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 995.22 10340.82 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd5 ENSMUSG00000064367 785.14 8157.99 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. Actb ENSMUSG00000029580 583.89 6066.90 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd3 ENSMUSG00000064360 547.26 5686.30 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Eef1a1 ENSMUSG00000037742 497.83 5172.70 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Co3 ENSMUSG00000064358 440.46 4576.60 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Mdk ENSMUSG00000027239 415.30 4315.17 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Hbb-y ENSMUSG00000052187 411.77 4278.49 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. H19 ENSMUSG00000000031 397.65 4131.78 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Gm13340 ENSMUSG00000083563 358.37 3723.64 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. mt-Rnr1 ENSMUSG00000064337 348.22 3618.18 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Rpl18a ENSMUSG00000045128 327.03 3398.00 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
21. Rpsa ENSMUSG00000032518 290.84 3021.97 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Pkm ENSMUSG00000032294 275.39 2861.44 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Nedd4 ENSMUSG00000032216 274.95 2856.87 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Hba-a1 ENSMUSG00000069919 271.86 2824.76 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Tuba1b ENSMUSG00000023004 261.27 2714.72 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Cfl1 ENSMUSG00000056201 257.74 2678.05 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Npm1 ENSMUSG00000057113 245.38 2549.62 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Ubb ENSMUSG00000019505 240.09 2494.65 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Tmsb4x ENSMUSG00000049775 238.76 2480.83 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
30. Tubb5 ENSMUSG00000001525 235.23 2444.16 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Hba-x ENSMUSG00000055609 232.58 2416.62 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
32. Eif4g2 ENSMUSG00000005610 225.96 2347.84 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Tuba1a ENSMUSG00000072235 221.55 2302.01 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
34. Igf2 ENSMUSG00000048583 197.28 2049.84 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
35. Ybx1 ENSMUSG00000028639 195.95 2036.02 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
36. Tpt1 ENSMUSG00000060126 195.51 2031.44 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Hsp90ab1 ENSMUSG00000023944 193.31 2008.59 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Hnrnpc ENSMUSG00000060373 184.04 1912.27 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
39. Tubb2b ENSMUSG00000045136 181.83 1889.30 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
40. Rpl4 ENSMUSG00000032399 167.71 1742.59 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Eif5a ENSMUSG00000078812 166.83 1733.45 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Hbb-bh1 ENSMUSG00000052217 163.74 1701.34 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
43. Map1b ENSMUSG00000052727 161.97 1682.95 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
44. Hsp90aa1 ENSMUSG00000021270 161.53 1678.38 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Rpl23 ENSMUSG00000071415 161.53 1678.38 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Fkbp1a ENSMUSG00000032966 153.59 1595.88 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
47. Banf1 ENSMUSG00000024844 148.73 1545.38 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Chchd2 ENSMUSG00000070493 147.85 1536.23 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Trp53i11 ENSMUSG00000068735 146.08 1517.84 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
50. Cdkn1c ENSMUSG00000037664 142.55 1481.16 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
51. Tubb3 ENSMUSG00000062380 142.55 1481.16 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
52. Set ENSMUSG00000054766 138.14 1435.34 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
53. Eef1b2 ENSMUSG00000025967 135.93 1412.38 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Hba-a2 ENSMUSG00000069917 135.49 1407.81 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
55. Stmn1 ENSMUSG00000028832 134.17 1394.09 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
56. U2af2 ENSMUSG00000030435 132.40 1375.70 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
57. Atp5g3 ENSMUSG00000018770 131.08 1361.99 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
58. Rps26 ENSMUSG00000025362 126.66 1316.06 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
59. Rrm2 ENSMUSG00000020649 126.66 1316.06 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
60. Paics ENSMUSG00000029247 124.90 1297.77 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. Ywhab ENSMUSG00000018326 124.46 1293.20 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
62. Myl6 ENSMUSG00000090841 122.25 1270.24 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
63. Ldha ENSMUSG00000063229 120.49 1251.95 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
64. Rps20 ENSMUSG00000028234 118.28 1228.99 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
65. Pcbp1 ENSMUSG00000051695 116.95 1215.17 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Pabpc1 ENSMUSG00000022283 115.63 1201.45 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
67. Hmga2 ENSMUSG00000056758 114.75 1192.31 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
68. Rps5 ENSMUSG00000012848 114.75 1192.31 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Grb10 ENSMUSG00000020176 113.87 1183.17 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
70. Cox8a ENSMUSG00000035885 111.66 1160.20 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
71. Rps4x ENSMUSG00000031320 110.78 1151.06 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
72. Lamp1 ENSMUSG00000031447 110.33 1146.38 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
73. Malat1 ENSMUSG00000092341 110.33 1146.38 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
74. Basp1 ENSMUSG00000045763 109.89 1141.81 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
75. Cd24a ENSMUSG00000047139 108.13 1123.52 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
76. Ran ENSMUSG00000029430 107.69 1118.95 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
77. Fscn1 ENSMUSG00000029581 105.92 1100.56 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
78. Marcks ENSMUSG00000069662 103.71 1077.60 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
79. Crabp1 ENSMUSG00000032291 100.63 1045.60 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
80. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.74 1036.35 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
81. Rplp1 ENSMUSG00000007892 98.86 1027.20 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
82. Tecr ENSMUSG00000031708 98.42 1022.63 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
83. Marcksl1 ENSMUSG00000047945 96.65 1004.24 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
84. Gm5805 ENSMUSG00000061848 96.21 999.67 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
85. Trim28 ENSMUSG00000005566 95.77 995.10 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
86. Cdk4 ENSMUSG00000006728 94.00 976.71 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
87. Ngfrap1 94.00 976.71 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
88. Anp32b ENSMUSG00000028333 93.56 972.13 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
89. Cadm1 ENSMUSG00000032076 93.56 972.13 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
90. Ywhae ENSMUSG00000020849 93.56 972.13 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
91. Rps3a1 ENSMUSG00000028081 92.68 962.99 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
92. Ywhag ENSMUSG00000051391 90.47 940.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
93. Ndufa12 ENSMUSG00000020022 90.03 935.46 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
94. Vim ENSMUSG00000026728 89.15 926.31 vimentin [Source:MGI Symbol;Acc:MGI:98932]
95. Gm14303 ENSMUSG00000081344 88.27 917.17 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
96. Stmn2 ENSMUSG00000027500 86.94 903.35 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
97. Hnrnpa2b1 ENSMUSG00000004980 86.50 898.78 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
98. Gm17132 ENSMUSG00000061331 85.62 889.63 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
99. Ddx5 ENSMUSG00000020719 84.30 875.92 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
100. Rps9 ENSMUSG00000006333 84.30 875.92 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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