Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s11.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4795.31 49826.60 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 3358.58 34897.98 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 2811.26 29210.94 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 2556.26 26561.32 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1798.85 18691.30 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1783.64 18533.26 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1508.60 15675.40 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Co1 ENSMUSG00000064351 975.79 10139.14 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 972.33 10103.18 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd5 ENSMUSG00000064367 926.03 9622.09 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. Actb ENSMUSG00000029580 625.42 6498.55 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Eef1a1 ENSMUSG00000037742 561.15 5830.74 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Nd3 ENSMUSG00000064360 490.66 5098.30 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Hbb-y ENSMUSG00000052187 467.85 4861.29 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. mt-Co3 ENSMUSG00000064358 420.17 4365.86 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Gm13340 ENSMUSG00000083563 400.13 4157.63 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Hba-a1 ENSMUSG00000069919 331.71 3446.70 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
18. Rpsa ENSMUSG00000032518 301.31 3130.82 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Rnr1 ENSMUSG00000064337 296.47 3080.53 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Mdk ENSMUSG00000027239 295.09 3066.19 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Nedd4 ENSMUSG00000032216 288.87 3001.56 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Tuba1b ENSMUSG00000023004 279.88 2908.15 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. H19 ENSMUSG00000000031 276.43 2872.30 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
24. Tuba1a ENSMUSG00000072235 273.66 2843.52 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
25. Npm1 ENSMUSG00000057113 266.06 2764.55 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Cfl1 ENSMUSG00000056201 255.69 2656.80 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Hnrnpc ENSMUSG00000060373 246.71 2563.49 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
28. Tmsb4x ENSMUSG00000049775 246.02 2556.32 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
29. Tubb2b ENSMUSG00000045136 241.18 2506.03 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
30. Eif4g2 ENSMUSG00000005610 231.51 2405.55 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Hba-x ENSMUSG00000055609 225.29 2340.92 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
32. Pkm ENSMUSG00000032294 224.60 2333.75 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Tubb5 ENSMUSG00000001525 222.52 2312.14 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Ubb ENSMUSG00000019505 212.16 2204.49 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Hbb-bh1 ENSMUSG00000052217 205.25 2132.69 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
36. Rpl4 ENSMUSG00000032399 202.48 2103.91 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Ybx1 ENSMUSG00000028639 197.65 2053.72 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
38. Hsp90ab1 ENSMUSG00000023944 196.95 2046.45 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Set ENSMUSG00000054766 190.73 1981.82 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
40. Hsp90aa1 ENSMUSG00000021270 181.75 1888.51 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Banf1 ENSMUSG00000024844 181.06 1881.34 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
42. Rrm2 ENSMUSG00000020649 174.15 1809.54 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
43. Atp5g3 ENSMUSG00000018770 164.47 1708.96 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Tpt1 ENSMUSG00000060126 156.87 1629.99 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
45. Rpl23 ENSMUSG00000071415 154.80 1608.48 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Tubb3 ENSMUSG00000062380 143.74 1493.56 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
47. Eef1b2 ENSMUSG00000025967 143.05 1486.39 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Rps26 ENSMUSG00000025362 140.29 1457.71 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Myl6 ENSMUSG00000090841 138.90 1443.27 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
50. Paics ENSMUSG00000029247 138.90 1443.27 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
51. Eif5a ENSMUSG00000078812 138.21 1436.10 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
52. Hba-a2 ENSMUSG00000069917 138.21 1436.10 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
53. Map1b ENSMUSG00000052727 136.83 1421.76 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
54. Grb10 ENSMUSG00000020176 131.99 1371.47 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
55. Trp53i11 ENSMUSG00000068735 131.99 1371.47 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
56. Rpl18a ENSMUSG00000045128 129.23 1342.79 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
57. U2af2 ENSMUSG00000030435 129.23 1342.79 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
58. Rps20 ENSMUSG00000028234 125.77 1306.84 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
59. Fkbp1a ENSMUSG00000032966 125.08 1299.67 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
60. Cadm1 ENSMUSG00000032076 124.39 1292.50 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
61. Chchd2 ENSMUSG00000070493 123.70 1285.33 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
62. Hmga2 ENSMUSG00000056758 123.01 1278.16 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
63. Pcbp1 ENSMUSG00000051695 118.86 1235.04 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
64. Ran ENSMUSG00000029430 118.86 1235.04 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
65. Igf2 ENSMUSG00000048583 117.48 1220.70 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
66. Rps4x ENSMUSG00000031320 117.48 1220.70 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
67. Cdkn1c ENSMUSG00000037664 116.79 1213.53 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
68. Trim28 ENSMUSG00000005566 114.03 1184.85 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Stmn1 ENSMUSG00000028832 112.64 1170.41 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
70. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 111.26 1156.07 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
71. Ldha ENSMUSG00000063229 107.12 1113.05 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
72. Ndufa12 ENSMUSG00000020022 107.12 1113.05 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
73. Pabpc1 ENSMUSG00000022283 104.35 1084.27 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
74. Malat1 ENSMUSG00000092341 102.28 1062.76 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
75. Gm14303 ENSMUSG00000081344 101.59 1055.59 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
76. Ywhab ENSMUSG00000018326 100.20 1041.15 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
77. Anp32b ENSMUSG00000028333 99.51 1033.98 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
78. Sub1 ENSMUSG00000022205 98.82 1026.81 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
79. Ywhag ENSMUSG00000051391 98.13 1019.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
80. Lamp1 ENSMUSG00000031447 97.44 1012.47 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
81. Tecr ENSMUSG00000031708 96.75 1005.30 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
82. Sox2 ENSMUSG00000074637 96.06 998.13 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
83. Marcks ENSMUSG00000069662 95.37 990.96 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
84. Slc25a5 ENSMUSG00000016319 93.99 976.62 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
85. Hmgn1 ENSMUSG00000040681 92.60 962.18 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
86. Marcksl1 ENSMUSG00000047945 92.60 962.18 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
87. Basp1 ENSMUSG00000045763 91.91 955.01 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
88. Hnrnph1 ENSMUSG00000007850 91.22 947.84 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
89. Rps5 ENSMUSG00000012848 91.22 947.84 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
90. Rplp1 ENSMUSG00000007892 90.53 940.67 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
91. Ngfrap1 88.46 919.16 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
92. Vim ENSMUSG00000026728 88.46 919.16 vimentin [Source:MGI Symbol;Acc:MGI:98932]
93. Hnrnpa2b1 ENSMUSG00000004980 86.38 897.55 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
94. Cdk4 ENSMUSG00000006728 85.69 890.38 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
95. Gm5805 ENSMUSG00000061848 85.69 890.38 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
96. Kpnb1 ENSMUSG00000001440 85.69 890.38 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
97. Cd24a ENSMUSG00000047139 85.00 883.21 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
98. Sfpq ENSMUSG00000028820 84.31 876.04 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
99. Cox8a ENSMUSG00000035885 82.24 854.53 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
100. Cltc ENSMUSG00000047126 81.55 847.36 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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