Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s8.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5920.99 61514.18 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 3156.78 32796.33 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Cytb ENSMUSG00000064370 1269.17 13185.63 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd1 ENSMUSG00000064341 1161.61 12068.17 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1161.61 12068.17 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Atp6 ENSMUSG00000064357 1140.10 11844.70 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1059.43 11006.60 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. Eef1a1 ENSMUSG00000037742 1021.79 10615.55 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
9. Rpsa ENSMUSG00000032518 758.27 7877.80 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
10. Tmsb4x ENSMUSG00000049775 596.94 6201.71 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
11. mt-Co1 ENSMUSG00000064351 596.94 6201.71 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. mt-Co3 ENSMUSG00000064358 575.43 5978.24 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Actb ENSMUSG00000029580 570.05 5922.35 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Hbb-y ENSMUSG00000052187 570.05 5922.35 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. mt-Nd3 ENSMUSG00000064360 473.25 4916.68 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Chchd2 ENSMUSG00000070493 446.36 4637.31 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
17. Npm1 ENSMUSG00000057113 435.60 4525.52 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. Hbb-bh1 ENSMUSG00000052217 419.47 4357.95 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
19. mt-Rnr1 ENSMUSG00000064337 397.96 4134.47 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Eif4g2 ENSMUSG00000005610 392.58 4078.58 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
21. Tpt1 ENSMUSG00000060126 381.83 3966.90 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
22. Ddx3x ENSMUSG00000000787 328.05 3408.17 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
23. mt-Nd2 ENSMUSG00000064345 317.29 3296.38 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
24. Gm5805 ENSMUSG00000061848 301.16 3128.80 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
25. Rpl4 ENSMUSG00000032399 295.78 3072.91 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
26. Atp5g3 ENSMUSG00000018770 290.40 3017.02 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
27. Rpl23 ENSMUSG00000071415 290.40 3017.02 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
28. Set ENSMUSG00000054766 290.40 3017.02 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
29. Tuba1a ENSMUSG00000072235 290.40 3017.02 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
30. Hmga2 ENSMUSG00000056758 285.02 2961.12 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
31. Tubb5 ENSMUSG00000001525 285.02 2961.12 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
32. mt-Nd5 ENSMUSG00000064367 274.27 2849.44 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
33. Rplp1 ENSMUSG00000007892 252.76 2625.97 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
34. Gm8292 ENSMUSG00000100215 247.38 2570.07 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
35. Ybx1 ENSMUSG00000028639 247.38 2570.07 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
36. Hmgn1 ENSMUSG00000040681 236.62 2458.29 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
37. Hsp90aa1 ENSMUSG00000021270 236.62 2458.29 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
38. Tuba1b ENSMUSG00000023004 225.87 2346.60 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
39. Ubb ENSMUSG00000019505 225.87 2346.60 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
40. Eef1b2 ENSMUSG00000025967 209.74 2179.02 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
41. Tubb2b ENSMUSG00000045136 209.74 2179.02 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
42. Gm10076 ENSMUSG00000060143 204.36 2123.13 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
43. Pcbp1 ENSMUSG00000051695 198.98 2067.24 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
44. Rps20 ENSMUSG00000028234 193.60 2011.34 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Rps9 ENSMUSG00000006333 193.60 2011.34 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
46. Crabp1 ENSMUSG00000032291 188.22 1955.45 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
47. Rps4x ENSMUSG00000031320 188.22 1955.45 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
48. Hba-a1 ENSMUSG00000069919 182.85 1899.66 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
49. Ran ENSMUSG00000029430 182.85 1899.66 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
50. Eif5a ENSMUSG00000078812 177.47 1843.77 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Rps5 ENSMUSG00000012848 177.47 1843.77 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
52. Hba-x ENSMUSG00000055609 172.09 1787.87 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
53. Rps14 ENSMUSG00000024608 172.09 1787.87 ribosomal protein S14 [Source:MGI Symbol;Acc:MGI:98107]
54. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 166.71 1731.98 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
55. Ldha ENSMUSG00000063229 155.96 1620.30 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
56. Rpl13a ENSMUSG00000074129 155.96 1620.30 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
57. Gm13340 ENSMUSG00000083563 150.58 1564.40 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
58. Pabpc1 ENSMUSG00000022283 150.58 1564.40 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
59. Rpl18a ENSMUSG00000045128 150.58 1564.40 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
60. Rps26 ENSMUSG00000025362 150.58 1564.40 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
61. Cadm1 ENSMUSG00000032076 145.20 1508.51 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
62. Eef2 ENSMUSG00000034994 145.20 1508.51 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
63. Gm5963 ENSMUSG00000052192 145.20 1508.51 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
64. Hnrnpk ENSMUSG00000021546 145.20 1508.51 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
65. Lrrc17 ENSMUSG00000039883 145.20 1508.51 leucine rich repeat containing 17 [Source:MGI Symbol;Acc:MGI:1921761]
66. Gnb2l1 Gnb2l1 139.82 1452.61
67. Hnrnpc ENSMUSG00000060373 139.82 1452.61 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
68. Morf4l1 ENSMUSG00000062270 139.82 1452.61 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
69. Rpl32 ENSMUSG00000057841 139.82 1452.61 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
70. Rpl36a ENSMUSG00000079435 139.82 1452.61 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
71. Rps10-ps1 ENSMUSG00000060438 139.82 1452.61 ribosomal protein S10, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3644167]
72. H19 ENSMUSG00000000031 134.45 1396.82 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
73. Rpl41 ENSMUSG00000093674 134.45 1396.82 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
74. Sfpq ENSMUSG00000028820 134.45 1396.82 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
75. Top2a ENSMUSG00000020914 134.45 1396.82 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
76. Gm14303 ENSMUSG00000081344 129.07 1340.93 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
77. Hnrnpa1 ENSMUSG00000046434 129.07 1340.93 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
78. Hsp90ab1 ENSMUSG00000023944 129.07 1340.93 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
79. Rpl8 ENSMUSG00000003970 129.07 1340.93 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
80. Ywhab ENSMUSG00000018326 129.07 1340.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
81. Zic1 ENSMUSG00000032368 129.07 1340.93 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
82. Gm9846 Gm9846 123.69 1285.04
83. Mdk ENSMUSG00000027239 123.69 1285.04 midkine [Source:MGI Symbol;Acc:MGI:96949]
84. Ddx5 ENSMUSG00000020719 118.31 1229.14 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
85. H3f3b ENSMUSG00000016559 118.31 1229.14 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
86. Rps3a1 ENSMUSG00000028081 118.31 1229.14 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
87. Top1 ENSMUSG00000070544 118.31 1229.14 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
88. Gm14586 ENSMUSG00000083621 112.93 1173.25 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Hnrnpa0 ENSMUSG00000007836 112.93 1173.25 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
90. Marcks ENSMUSG00000069662 112.93 1173.25 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
91. Morf4l2 ENSMUSG00000031422 112.93 1173.25 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
92. Rpl36a-ps1 ENSMUSG00000060377 112.93 1173.25 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
93. Serbp1 ENSMUSG00000036371 112.93 1173.25 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
94. Srsf3 ENSMUSG00000071172 112.93 1173.25 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
95. Vim ENSMUSG00000026728 112.93 1173.25 vimentin [Source:MGI Symbol;Acc:MGI:98932]
96. Btf3 ENSMUSG00000021660 107.56 1117.46 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
97. Caprin1 ENSMUSG00000027184 107.56 1117.46 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
98. Csde1 ENSMUSG00000068823 107.56 1117.46 cold shock domain containing E1, RNA binding [Source:MGI Symbol;Acc:MGI:92356]
99. Hint1 ENSMUSG00000020267 107.56 1117.46 histidine triad nucleotide binding protein 1 [Source:MGI Symbol;Acc:MGI:1321133]
100. Myl6 ENSMUSG00000090841 107.56 1117.46 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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