Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_3, section s1.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2441.41 25363.76 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. Hbb-y ENSMUSG00000052187 1308.15 13590.34 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
3. mt-Atp6 ENSMUSG00000064357 1199.72 12463.87 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1007.35 10465.34 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Cytb ENSMUSG00000064370 944.39 9811.25 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
6. Eef1a1 ENSMUSG00000037742 919.90 9556.82 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
7. mt-Rnr2 ENSMUSG00000064339 818.47 8503.07 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. Rpsa ENSMUSG00000032518 734.52 7630.91 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
9. mt-Co1 ENSMUSG00000064351 727.53 7558.29 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Co3 ENSMUSG00000064358 584.12 6068.41 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. mt-Nd4 ENSMUSG00000064363 570.13 5923.07 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Tubb5 ENSMUSG00000001525 549.14 5705.00 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
13. mt-Co2 ENSMUSG00000064354 545.65 5668.75 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
14. Tuba1b ENSMUSG00000023004 493.18 5123.64 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
15. Hba-a1 ENSMUSG00000069919 475.69 4941.93 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
16. Actb ENSMUSG00000029580 444.21 4614.89 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Hba-x ENSMUSG00000055609 430.22 4469.55 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
18. Hbb-bh1 ENSMUSG00000052217 402.24 4178.86 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
19. Tmsb4x ENSMUSG00000049775 402.24 4178.86 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
20. Rpl23 ENSMUSG00000071415 395.24 4106.14 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
21. mt-Nd3 ENSMUSG00000064360 349.77 3633.75 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
22. Mdk ENSMUSG00000027239 342.78 3561.13 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Tubb2b ENSMUSG00000045136 311.30 3234.09 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
24. Chchd2 ENSMUSG00000070493 307.80 3197.73 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
25. H19 ENSMUSG00000000031 300.80 3125.00 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
26. Rpl18a ENSMUSG00000045128 300.80 3125.00 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
27. Tpt1 ENSMUSG00000060126 300.80 3125.00 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Ubb ENSMUSG00000019505 290.31 3016.02 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Npm1 ENSMUSG00000057113 286.81 2979.66 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
30. Eif4g2 ENSMUSG00000005610 283.32 2943.41 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Rps9 ENSMUSG00000006333 276.32 2870.68 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
32. Rpl4 ENSMUSG00000032399 258.83 2688.98 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Rplp1 ENSMUSG00000007892 258.83 2688.98 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
34. Tuba1a ENSMUSG00000072235 255.33 2652.62 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
35. Set ENSMUSG00000054766 251.84 2616.36 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Hmgn1 ENSMUSG00000040681 244.84 2543.64 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
37. mt-Nd2 ENSMUSG00000064345 241.34 2507.28 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
38. Ybx1 ENSMUSG00000028639 227.35 2361.93 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
39. Rps4x ENSMUSG00000031320 223.85 2325.57 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
40. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 220.36 2289.32 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
41. mt-Nd5 ENSMUSG00000064367 216.86 2252.95 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
42. Eef1b2 ENSMUSG00000025967 202.87 2107.61 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
43. Hsp90ab1 ENSMUSG00000023944 199.37 2071.25 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
44. Crabp1 ENSMUSG00000032291 195.87 2034.89 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
45. Rps5 ENSMUSG00000012848 192.37 1998.53 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
46. Rps20 ENSMUSG00000028234 188.88 1962.27 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Gm13340 ENSMUSG00000083563 185.38 1925.91 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
48. Gm5805 ENSMUSG00000061848 185.38 1925.91 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
49. Ran ENSMUSG00000029430 185.38 1925.91 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
50. Rrm2 ENSMUSG00000020649 185.38 1925.91 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
51. Hba-a2 ENSMUSG00000069917 167.89 1744.21 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
52. Pkm ENSMUSG00000032294 157.40 1635.23 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
53. Hmga2 ENSMUSG00000056758 153.90 1598.86 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
54. Gm8292 ENSMUSG00000100215 150.40 1562.50 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
55. Hist1h2ap ENSMUSG00000094777 150.40 1562.50 histone cluster 1, H2ap [Source:MGI Symbol;Acc:MGI:3710573]
56. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 150.40 1562.50 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
57. Ldha ENSMUSG00000063229 150.40 1562.50 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
58. Pabpc1 ENSMUSG00000022283 150.40 1562.50 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
59. Rpl32 ENSMUSG00000057841 150.40 1562.50 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
60. Rpl41 ENSMUSG00000093674 146.90 1526.14 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
61. Rps26 ENSMUSG00000025362 146.90 1526.14 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
62. Rps3a1 ENSMUSG00000028081 146.90 1526.14 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
63. Btf3 ENSMUSG00000021660 143.41 1489.88 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
64. Hsp90aa1 ENSMUSG00000021270 143.41 1489.88 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
65. Vim ENSMUSG00000026728 143.41 1489.88 vimentin [Source:MGI Symbol;Acc:MGI:98932]
66. Cd24a ENSMUSG00000047139 139.91 1453.52 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
67. Hnrnpk ENSMUSG00000021546 139.91 1453.52 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
68. Cdk4 ENSMUSG00000006728 132.91 1380.80 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
69. Atp5g3 ENSMUSG00000018770 129.42 1344.54 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
70. H3f3b ENSMUSG00000016559 125.92 1308.18 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
71. Arl6ip1 ENSMUSG00000030654 122.42 1271.82 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
72. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 122.42 1271.82 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
73. Hnrnpc ENSMUSG00000060373 118.92 1235.46 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
74. Srsf3 ENSMUSG00000071172 118.92 1235.46 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
75. Ccnd2 ENSMUSG00000000184 115.42 1199.10 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
76. Ddx5 ENSMUSG00000020719 115.42 1199.10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
77. Hes5 ENSMUSG00000048001 115.42 1199.10 hes family bHLH transcription factor 5 [Source:MGI Symbol;Acc:MGI:104876]
78. Hspe1 ENSMUSG00000073676 115.42 1199.10 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
79. Id1 ENSMUSG00000042745 115.42 1199.10 inhibitor of DNA binding 1 [Source:MGI Symbol;Acc:MGI:96396]
80. Id3 ENSMUSG00000007872 115.42 1199.10 inhibitor of DNA binding 3 [Source:MGI Symbol;Acc:MGI:96398]
81. Mrfap1 ENSMUSG00000055302 115.42 1199.10 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
82. Myl6 ENSMUSG00000090841 115.42 1199.10 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
83. Rpl36a ENSMUSG00000079435 115.42 1199.10 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
84. Rpl36a-ps1 ENSMUSG00000060377 115.42 1199.10 ribosomal protein L36A, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3642585]
85. Ckb ENSMUSG00000001270 111.93 1162.84 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
86. Grb10 ENSMUSG00000020176 111.93 1162.84 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
87. Hnrnpa2b1 ENSMUSG00000004980 111.93 1162.84 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
88. Ncl ENSMUSG00000026234 111.93 1162.84 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
89. Cdkn1c ENSMUSG00000037664 108.43 1126.48 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
90. Gm6274 ENSMUSG00000081281 108.43 1126.48 predicted gene 6274 [Source:MGI Symbol;Acc:MGI:3645367]
91. Rpl13a ENSMUSG00000074129 108.43 1126.48 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
92. Sod1 ENSMUSG00000022982 108.43 1126.48 superoxide dismutase 1, soluble [Source:MGI Symbol;Acc:MGI:98351]
93. Trim28 ENSMUSG00000005566 108.43 1126.48 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. Cox8a ENSMUSG00000035885 104.93 1090.12 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
95. Gm10076 ENSMUSG00000060143 104.93 1090.12 predicted gene 10076 [Source:MGI Symbol;Acc:MGI:3704451]
96. Hnrnpa1 ENSMUSG00000046434 104.93 1090.12 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
97. Nedd4 ENSMUSG00000032216 104.93 1090.12 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
98. Rpl26 ENSMUSG00000060938 104.93 1090.12 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
99. Sfpq ENSMUSG00000028820 104.93 1090.12 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
100. Top1 ENSMUSG00000070544 104.93 1090.12 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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