Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s73.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4695.17 48783.66 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 3083.52 32038.33 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Nd1 ENSMUSG00000064341 2828.62 29389.87 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 2475.04 25716.11 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2187.24 22725.82 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Co1 ENSMUSG00000064351 1669.21 17343.39 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. Ptma ENSMUSG00000026238 1652.77 17172.58 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
8. Col1a1 ENSMUSG00000001506 1488.31 15463.81 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
9. H19 ENSMUSG00000000031 1348.53 14011.47 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Nd3 ENSMUSG00000064360 1200.52 12473.62 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Actb ENSMUSG00000029580 1101.84 11448.32 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Igf2 ENSMUSG00000048583 1052.51 10935.77 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. mt-Rnr2 ENSMUSG00000064339 994.95 10337.71 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
14. mt-Nd2 ENSMUSG00000064345 748.27 7774.66 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Eef1a1 ENSMUSG00000037742 567.37 5895.08 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Gm13340 ENSMUSG00000083563 559.14 5809.56 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Col1a2 ENSMUSG00000029661 526.25 5467.83 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
18. Mdk ENSMUSG00000027239 526.25 5467.83 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. mt-Co3 ENSMUSG00000064358 526.25 5467.83 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Col3a1 ENSMUSG00000026043 468.70 4869.88 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
21. mt-Nd5 ENSMUSG00000064367 460.47 4784.37 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Gm10800 ENSMUSG00000075014 452.25 4698.96 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Tuba1b ENSMUSG00000023004 312.46 3246.52 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Cfl1 ENSMUSG00000056201 287.80 2990.29 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Pkm ENSMUSG00000032294 279.57 2904.78 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Gm17132 ENSMUSG00000061331 263.13 2733.97 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
27. Tubb5 ENSMUSG00000001525 263.13 2733.97 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Meg3 ENSMUSG00000021268 238.46 2477.64 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
29. Sparc ENSMUSG00000018593 230.24 2392.23 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
30. Lamp1 ENSMUSG00000031447 222.01 2306.72 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
31. Tpt1 ENSMUSG00000060126 222.01 2306.72 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Rpl4 ENSMUSG00000032399 213.79 2221.32 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Rpl23 ENSMUSG00000071415 205.57 2135.91 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
34. Chchd2 ENSMUSG00000070493 197.35 2050.50 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. mt-Rnr1 ENSMUSG00000064337 197.35 2050.50 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
36. Eif4g2 ENSMUSG00000005610 189.12 1964.99 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Gm26870 ENSMUSG00000097312 189.12 1964.99 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
38. Rps26 ENSMUSG00000025362 189.12 1964.99 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
39. Hmga2 ENSMUSG00000056758 180.90 1879.58 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
40. Rpl18a ENSMUSG00000045128 180.90 1879.58 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
41. Rpsa ENSMUSG00000032518 180.90 1879.58 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
42. Eif5a ENSMUSG00000078812 172.68 1794.18 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Npm1 ENSMUSG00000057113 172.68 1794.18 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
44. Hnrnpc ENSMUSG00000060373 164.45 1708.66 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Ngfrap1 164.45 1708.66 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
46. Plagl1 ENSMUSG00000019817 164.45 1708.66 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
47. Hsp90ab1 ENSMUSG00000023944 156.23 1623.26 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
48. Myl6 ENSMUSG00000090841 148.01 1537.85 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
49. Serpinh1 ENSMUSG00000070436 148.01 1537.85 serine (or cysteine) peptidase inhibitor, clade H, member 1 [Source:MGI Symbol;Acc:MGI:88283]
50. Tmsb4x ENSMUSG00000049775 148.01 1537.85 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
51. Ubb ENSMUSG00000019505 148.01 1537.85 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
52. Acta2 ENSMUSG00000035783 131.56 1366.93 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
53. Gm14586 ENSMUSG00000083621 131.56 1366.93 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
54. Hbb-y ENSMUSG00000052187 131.56 1366.93 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
55. Lum ENSMUSG00000036446 131.56 1366.93 lumican [Source:MGI Symbol;Acc:MGI:109347]
56. Rpl39-ps ENSMUSG00000036305 131.56 1366.93 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
57. Rps20 ENSMUSG00000028234 131.56 1366.93 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
58. Ddx39b ENSMUSG00000019432 123.34 1281.52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
59. Ddx5 ENSMUSG00000020719 123.34 1281.52 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
60. Fn1 ENSMUSG00000026193 123.34 1281.52 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
61. Hmgn1 ENSMUSG00000040681 123.34 1281.52 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
62. Nnat ENSMUSG00000067786 123.34 1281.52 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
63. Rps4x ENSMUSG00000031320 123.34 1281.52 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Vim ENSMUSG00000026728 123.34 1281.52 vimentin [Source:MGI Symbol;Acc:MGI:98932]
65. Gm9844 ENSMUSG00000091955 115.12 1196.12 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
66. Nedd4 ENSMUSG00000032216 115.12 1196.12 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
67. Peg3 ENSMUSG00000002265 115.12 1196.12 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
68. Rplp1 ENSMUSG00000007892 115.12 1196.12 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
69. Rps3a1 ENSMUSG00000028081 115.12 1196.12 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
70. Tpm1 ENSMUSG00000032366 115.12 1196.12 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
71. U2af2 ENSMUSG00000030435 115.12 1196.12 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
72. Ago2 ENSMUSG00000036698 106.90 1110.71 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
73. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 106.90 1110.71 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
74. Calr ENSMUSG00000003814 106.90 1110.71 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
75. Col5a1 ENSMUSG00000026837 106.90 1110.71 collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
76. Eef2 ENSMUSG00000034994 106.90 1110.71 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
77. Fkbp1a ENSMUSG00000032966 106.90 1110.71 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
78. Gm5805 ENSMUSG00000061848 106.90 1110.71 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
79. Rps5 ENSMUSG00000012848 106.90 1110.71 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
80. Sepw1 106.90 1110.71 selenoprotein W, muscle 1
81. Ywhab ENSMUSG00000018326 106.90 1110.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
82. Atp5g3 ENSMUSG00000018770 98.67 1025.20 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
83. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 98.67 1025.20 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
84. Hand1 ENSMUSG00000037335 98.67 1025.20 heart and neural crest derivatives expressed 1 [Source:MGI Symbol;Acc:MGI:103577]
85. Pcbp1 ENSMUSG00000051695 98.67 1025.20 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
86. Son ENSMUSG00000022961 98.67 1025.20 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
87. Ywhae ENSMUSG00000020849 98.67 1025.20 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
88. Axl ENSMUSG00000002602 90.45 939.79 AXL receptor tyrosine kinase [Source:MGI Symbol;Acc:MGI:1347244]
89. Gm10073 ENSMUSG00000060019 90.45 939.79 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
90. Gnb2l1 Gnb2l1 90.45 939.79
91. Grb10 ENSMUSG00000020176 90.45 939.79 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
92. Igfbp4 ENSMUSG00000017493 90.45 939.79 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
93. Itga6 ENSMUSG00000027111 90.45 939.79 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
94. Jund ENSMUSG00000071076, ENSMUSG00000110974 90.45 939.79 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
95. Map1b ENSMUSG00000052727 90.45 939.79 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
96. Postn ENSMUSG00000027750 90.45 939.79 periostin, osteoblast specific factor [Source:MGI Symbol;Acc:MGI:1926321]
97. Rpl32 ENSMUSG00000057841 90.45 939.79 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
98. Set ENSMUSG00000054766 90.45 939.79 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
99. Tecr ENSMUSG00000031708 90.45 939.79 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
100. Tpm4 ENSMUSG00000031799 90.45 939.79 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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