Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s2.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3342.57 34727.90 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2498.94 25962.94 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2013.21 20916.41 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 1572.22 16334.71 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1517.26 15763.70 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1485.30 15431.65 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1039.20 10796.85 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 962.51 10000.08 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Actb ENSMUSG00000029580 644.23 6693.28 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. Eef1a1 ENSMUSG00000037742 595.66 6188.66 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Nd2 ENSMUSG00000064345 577.76 6002.68 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. Mdk ENSMUSG00000027239 563.70 5856.61 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Nd3 ENSMUSG00000064360 521.52 5418.37 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Rpsa ENSMUSG00000032518 484.45 5033.23 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Hbb-y ENSMUSG00000052187 456.33 4741.08 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Cfl1 ENSMUSG00000056201 412.87 4289.55 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
17. Tuba1b ENSMUSG00000023004 377.08 3917.70 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
18. mt-Co3 ENSMUSG00000064358 360.46 3745.03 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Pkm ENSMUSG00000032294 334.90 3479.47 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. Rrm2 ENSMUSG00000020649 318.28 3306.80 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
21. Gm13340 ENSMUSG00000083563 293.99 3054.43 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. mt-Nd5 ENSMUSG00000064367 287.60 2988.04 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Eif5a ENSMUSG00000078812 282.49 2934.95 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
24. Tubb5 ENSMUSG00000001525 279.93 2908.36 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. H19 ENSMUSG00000000031 272.26 2828.67 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
26. Ybx1 ENSMUSG00000028639 263.32 2735.78 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
27. Ubb ENSMUSG00000019505 260.76 2709.19 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Npm1 ENSMUSG00000057113 256.92 2669.29 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
29. Hnrnpc ENSMUSG00000060373 250.53 2602.90 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
30. Rpl4 ENSMUSG00000032399 245.42 2549.81 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Set ENSMUSG00000054766 244.14 2536.51 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
32. Eif4g2 ENSMUSG00000005610 241.59 2510.02 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Atp5g3 ENSMUSG00000018770 236.47 2456.82 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
34. Hsp90ab1 ENSMUSG00000023944 230.08 2390.43 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Tmsb4x ENSMUSG00000049775 223.69 2324.05 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
36. Rps26 ENSMUSG00000025362 221.13 2297.45 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
37. Tpt1 ENSMUSG00000060126 219.86 2284.25 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Hba-a1 ENSMUSG00000069919 217.30 2257.66 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
39. Tubb2b ENSMUSG00000045136 216.02 2244.36 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
40. Nedd4 ENSMUSG00000032216 210.91 2191.27 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
41. Rplp1 ENSMUSG00000007892 205.80 2138.18 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
42. Ccnd2 ENSMUSG00000000184 195.57 2031.89 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
43. Hsp90aa1 ENSMUSG00000021270 195.57 2031.89 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
44. Rpl18a ENSMUSG00000045128 191.73 1991.99 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
45. U2af2 ENSMUSG00000030435 187.90 1952.20 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
46. Rps5 ENSMUSG00000012848 184.07 1912.41 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
47. Ran ENSMUSG00000029430 181.51 1885.81 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
48. Chchd2 ENSMUSG00000070493 180.23 1872.51 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Grb10 ENSMUSG00000020176 180.23 1872.51 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
50. Rps20 ENSMUSG00000028234 173.84 1806.12 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Banf1 ENSMUSG00000024844 171.28 1779.53 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
52. Hbb-bh1 ENSMUSG00000052217 170.00 1766.23 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
53. Fkbp1a ENSMUSG00000032966 168.73 1753.03 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Cox8a ENSMUSG00000035885 166.17 1726.44 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
55. Paics ENSMUSG00000029247 166.17 1726.44 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
56. Hmga2 ENSMUSG00000056758 158.50 1646.75 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
57. Rpl23 ENSMUSG00000071415 158.50 1646.75 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
58. Hba-x ENSMUSG00000055609 155.94 1620.15 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
59. Ldha ENSMUSG00000063229 154.67 1606.96 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
60. Fscn1 ENSMUSG00000029581 149.55 1553.76 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
61. Pabpc1 ENSMUSG00000022283 148.27 1540.46 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Eef1b2 ENSMUSG00000025967 144.44 1500.67 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
63. Rpl39-ps ENSMUSG00000036305 140.61 1460.88 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
64. Gm10800 ENSMUSG00000075014 136.77 1420.98 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
65. Trp53i11 ENSMUSG00000068735 136.77 1420.98 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
66. 2810417H13Rik 135.49 1407.68 RIKEN cDNA 2810417H13 gene
67. Gm14303 ENSMUSG00000081344 135.49 1407.68 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
68. Rpl37 ENSMUSG00000041841 135.49 1407.68 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
69. Msi1 ENSMUSG00000054256 132.94 1381.19 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
70. Marcksl1 ENSMUSG00000047945 130.38 1354.59 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
71. Ywhae ENSMUSG00000020849 129.10 1341.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
72. Rps4x ENSMUSG00000031320 126.54 1314.70 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
73. Map1b ENSMUSG00000052727 125.27 1301.50 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
74. Pcbp1 ENSMUSG00000051695 122.71 1274.91 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
75. Anp32b ENSMUSG00000028333 118.88 1235.11 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
76. Trim28 ENSMUSG00000005566 118.88 1235.11 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
77. Ywhab ENSMUSG00000018326 118.88 1235.11 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
78. Erdr1 116.32 1208.52 erythroid differentiation regulator 1, transcript variant 1, non-coding
79. Gnai2 ENSMUSG00000032562 116.32 1208.52 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
80. Ndufa12 ENSMUSG00000020022 113.76 1181.92 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
81. Gm9846 Gm9846 107.37 1115.53
82. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 106.09 1102.23 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
83. Rps3a1 ENSMUSG00000028081 104.81 1088.93 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
84. Vim ENSMUSG00000026728 104.81 1088.93 vimentin [Source:MGI Symbol;Acc:MGI:98932]
85. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 102.26 1062.44 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
86. Lamp1 ENSMUSG00000031447 102.26 1062.44 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
87. Tecr ENSMUSG00000031708 100.98 1049.14 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
88. Tuba1a ENSMUSG00000072235 100.98 1049.14 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
89. Fkbp4 ENSMUSG00000030357 99.70 1035.84 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
90. Gm5963 ENSMUSG00000052192 99.70 1035.84 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
91. Hnrnpa0 ENSMUSG00000007836 99.70 1035.84 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
92. Rps15 ENSMUSG00000063457 99.70 1035.84 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
93. mt-Rnr1 ENSMUSG00000064337 99.70 1035.84 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
94. Cdk4 ENSMUSG00000006728 98.42 1022.54 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
95. Pa2g4 ENSMUSG00000025364 97.15 1009.35 proliferation-associated 2G4 [Source:MGI Symbol;Acc:MGI:894684]
96. Rpl8 ENSMUSG00000003970 97.15 1009.35 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
97. Tmpo ENSMUSG00000019961 95.87 996.05 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
98. Serbp1 ENSMUSG00000036371 94.59 982.75 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
99. Hba-a2 ENSMUSG00000069917 93.31 969.45 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
100. Hmgn1 ENSMUSG00000040681 93.31 969.45 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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