Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s9.

Sample reads: 96,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7173.37 74536.12 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Rnr1 ENSMUSG00000064337 3061.39 31809.89 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
3. mt-Atp6 ENSMUSG00000064357 2686.17 27911.10 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Cytb ENSMUSG00000064370 1984.11 20616.23 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Co2 ENSMUSG00000064354 1792.89 18629.33 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 1682.13 17478.46 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Nd1 ENSMUSG00000064341 1283.87 13340.27 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Co1 ENSMUSG00000064351 1147.79 11926.31 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1026.19 10662.80 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd4 ENSMUSG00000064363 995.00 10338.72 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 711.10 7388.81 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 623.85 6482.22 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Eef1a1 ENSMUSG00000037742 559.20 5810.46 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Actb ENSMUSG00000029580 514.90 5350.16 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Rpsa ENSMUSG00000032518 413.19 4293.32 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Npm1 ENSMUSG00000057113 378.83 3936.30 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
17. mt-Co3 ENSMUSG00000064358 377.02 3917.49 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Tmsb4x ENSMUSG00000049775 305.14 3170.61 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
19. Hbb-y ENSMUSG00000052187 295.65 3072.00 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Nedd4 ENSMUSG00000032216 276.66 2874.68 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
21. Ybx1 ENSMUSG00000028639 259.49 2696.27 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
22. Mdk ENSMUSG00000027239 258.58 2686.82 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Ran ENSMUSG00000029430 255.42 2653.98 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
24. Set ENSMUSG00000054766 226.48 2353.28 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Eif5a ENSMUSG00000078812 226.03 2348.60 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
26. H19 ENSMUSG00000000031 206.59 2146.61 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
27. Tuba1b ENSMUSG00000023004 205.69 2137.26 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Hsp90ab1 ENSMUSG00000023944 200.26 2080.84 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Malat1 ENSMUSG00000092341 185.35 1925.91 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
30. Rpl23 ENSMUSG00000071415 180.37 1874.17 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. Rps20 ENSMUSG00000028234 178.11 1850.68 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
32. Hsp90aa1 ENSMUSG00000021270 173.14 1799.04 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
33. Tubb5 ENSMUSG00000001525 172.24 1789.69 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Tpt1 ENSMUSG00000060126 170.88 1775.56 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Atp5g3 ENSMUSG00000018770 169.98 1766.21 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
36. Cfl1 ENSMUSG00000056201 169.98 1766.21 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
37. Igf2 ENSMUSG00000048583 168.62 1752.07 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
38. Eif4g2 ENSMUSG00000005610 162.74 1690.98 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Chchd2 ENSMUSG00000070493 152.35 1583.02 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Rplp1 ENSMUSG00000007892 150.54 1564.21 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
41. Eef1b2 ENSMUSG00000025967 149.18 1550.08 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Gm13340 ENSMUSG00000083563 149.18 1550.08 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
43. Rpl4 ENSMUSG00000032399 147.83 1536.05 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
44. Rps26 ENSMUSG00000025362 146.02 1517.25 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
45. Ubb ENSMUSG00000019505 144.21 1498.44 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
46. Rps3a1 ENSMUSG00000028081 143.76 1493.76 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
47. Rpl39-ps ENSMUSG00000036305 142.40 1479.63 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
48. Pkm ENSMUSG00000032294 139.24 1446.80 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
49. Pabpc1 ENSMUSG00000022283 137.88 1432.67 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
50. Rpl32 ENSMUSG00000057841 134.72 1399.83 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
51. Ldha ENSMUSG00000063229 130.19 1352.76 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
52. Rps4x ENSMUSG00000031320 129.29 1343.41 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Hnrnpa2b1 ENSMUSG00000004980 125.67 1305.80 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
54. Hnrnpc ENSMUSG00000060373 125.67 1305.80 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Tuba1a ENSMUSG00000072235 124.32 1291.77 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
56. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 122.96 1277.64 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
57. Son ENSMUSG00000022961 118.89 1235.35 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
58. Rrm2 ENSMUSG00000020649 118.44 1230.67 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
59. Pcbp1 ENSMUSG00000051695 114.82 1193.06 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
60. Hmga2 ENSMUSG00000056758 113.92 1183.71 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
61. Ccnd2 ENSMUSG00000000184 113.02 1174.35 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
62. Hbb-bh1 ENSMUSG00000052217 107.14 1113.26 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
63. Hnrnph1 ENSMUSG00000007850 106.69 1108.58 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
64. Marcks ENSMUSG00000069662 106.24 1103.90 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
65. Rpl37 ENSMUSG00000041841 105.33 1094.45 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
66. 2810417H13Rik 104.88 1089.77 RIKEN cDNA 2810417H13 gene
67. Gm26924 Gm26924 103.52 1075.64
68. Serbp1 ENSMUSG00000036371 103.07 1070.97 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
69. Gm14303 ENSMUSG00000081344 102.17 1061.61 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
70. Gm10800 ENSMUSG00000075014 101.71 1056.83 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
71. Hmgn1 ENSMUSG00000040681 100.81 1047.48 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
72. Paics ENSMUSG00000029247 100.36 1042.81 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
73. Banf1 ENSMUSG00000024844 99.91 1038.13 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
74. Rps5 ENSMUSG00000012848 98.55 1024.00 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
75. Vim ENSMUSG00000026728 98.10 1019.32 vimentin [Source:MGI Symbol;Acc:MGI:98932]
76. Marcksl1 ENSMUSG00000047945 96.74 1005.19 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
77. Slc25a5 ENSMUSG00000016319 96.29 1000.52 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
78. Gm17132 ENSMUSG00000061331 95.39 991.17 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
79. Top2a ENSMUSG00000020914 94.93 986.39 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
80. Eef2 ENSMUSG00000034994 91.32 948.88 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
81. Sfpq ENSMUSG00000028820 91.32 948.88 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
82. Ncl ENSMUSG00000026234 89.06 925.39 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
83. Ywhab ENSMUSG00000018326 88.15 915.94 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
84. Cdkn1c ENSMUSG00000037664 86.34 897.13 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
85. Rpl7 ENSMUSG00000043716 85.89 892.45 ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
86. Tubb2b ENSMUSG00000045136 85.89 892.45 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
87. Sub1 ENSMUSG00000022205 84.54 878.43 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
88. Top1 ENSMUSG00000070544 84.54 878.43 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
89. Calm1 ENSMUSG00000001175 83.63 868.97 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
90. Grb10 ENSMUSG00000020176 83.63 868.97 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
91. Anp32b ENSMUSG00000028333 81.37 845.49 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
92. Hnrnpk ENSMUSG00000021546 81.37 845.49 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
93. Hba-a1 ENSMUSG00000069919 80.92 840.81 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
94. Hba-x ENSMUSG00000055609 80.92 840.81 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
95. Crabp1 ENSMUSG00000032291 80.02 831.46 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
96. Nasp ENSMUSG00000028693 80.02 831.46 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
97. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 80.02 831.46 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
98. Rpl8 ENSMUSG00000003970 80.02 831.46 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
99. Rpl26 ENSMUSG00000060938 78.66 817.33 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
100. Ywhae ENSMUSG00000020849 78.66 817.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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