Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E10_5_slice_1, section s8.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5699.88 59215.88 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Rnr1 ENSMUSG00000064337 3129.12 32508.33 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
3. mt-Atp6 ENSMUSG00000064357 2189.00 22741.46 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. Ptma ENSMUSG00000026238 2158.00 22419.40 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Cytb ENSMUSG00000064370 1969.16 20457.54 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
6. mt-Co2 ENSMUSG00000064354 1801.53 18716.04 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1503.38 15618.57 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Co1 ENSMUSG00000064351 1055.96 10970.34 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd4 ENSMUSG00000064363 943.79 9805.01 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Nd2 ENSMUSG00000064345 863.04 8966.10 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Nd3 ENSMUSG00000064360 743.94 7728.77 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd5 ENSMUSG00000064367 719.47 7474.55 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. Eef1a1 ENSMUSG00000037742 651.76 6771.12 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Actb ENSMUSG00000029580 437.64 4546.63 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Rpsa ENSMUSG00000032518 430.70 4474.53 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Npm1 ENSMUSG00000057113 340.56 3538.07 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
17. mt-Co3 ENSMUSG00000064358 301.82 3135.60 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Tmsb4x ENSMUSG00000049775 297.74 3093.21 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
19. Mdk ENSMUSG00000027239 280.20 2910.99 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. Ybx1 ENSMUSG00000028639 279.79 2906.73 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
21. Eif5a ENSMUSG00000078812 278.57 2894.06 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
22. Hsp90ab1 ENSMUSG00000023944 261.44 2716.09 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Hbb-y ENSMUSG00000052187 240.23 2495.74 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
24. Set ENSMUSG00000054766 228.81 2377.10 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. H19 ENSMUSG00000000031 210.05 2182.20 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
26. Nedd4 ENSMUSG00000032216 208.01 2161.01 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Ran ENSMUSG00000029430 205.15 2131.30 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
28. Tuba1b ENSMUSG00000023004 196.59 2042.37 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Hsp90aa1 ENSMUSG00000021270 189.25 1966.11 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
30. Rpl23 ENSMUSG00000071415 186.39 1936.40 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. Rps26 ENSMUSG00000025362 186.39 1936.40 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
32. Rps3a1 ENSMUSG00000028081 183.54 1906.79 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
33. Igf2 ENSMUSG00000048583 181.91 1889.86 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
34. Rps20 ENSMUSG00000028234 175.38 1822.02 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
35. Rplp1 ENSMUSG00000007892 167.22 1737.24 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
36. Atp5g3 ENSMUSG00000018770 163.96 1703.38 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Chchd2 ENSMUSG00000070493 163.96 1703.38 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Eif4g2 ENSMUSG00000005610 161.92 1682.18 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Hmga2 ENSMUSG00000056758 157.84 1639.80 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
40. Pkm ENSMUSG00000032294 157.84 1639.80 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
41. Cfl1 ENSMUSG00000056201 157.03 1631.38 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
42. Ubb ENSMUSG00000019505 154.99 1610.19 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
43. Ldha ENSMUSG00000063229 154.17 1601.67 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
44. Rpl4 ENSMUSG00000032399 151.32 1572.06 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Tpt1 ENSMUSG00000060126 149.69 1555.12 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Pcbp1 ENSMUSG00000051695 148.87 1546.61 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. Eef1b2 ENSMUSG00000025967 148.46 1542.35 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Malat1 ENSMUSG00000092341 148.05 1538.09 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
49. Tubb5 ENSMUSG00000001525 146.83 1525.41 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
50. Rpl39-ps ENSMUSG00000036305 141.12 1466.09 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
51. Marcksl1 ENSMUSG00000047945 138.27 1436.48 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
52. Pabpc1 ENSMUSG00000022283 137.86 1432.22 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
53. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 134.59 1398.25 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
54. Gm13340 ENSMUSG00000083563 134.19 1394.10 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
55. Rps4x ENSMUSG00000031320 130.11 1351.71 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Rpl37 ENSMUSG00000041841 128.07 1330.52 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
57. Hmgn1 ENSMUSG00000040681 126.44 1313.58 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
58. Hnrnpc ENSMUSG00000060373 123.58 1283.87 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
59. Ccnd2 ENSMUSG00000000184 123.17 1279.61 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
60. Rpl32 ENSMUSG00000057841 121.14 1258.52 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
61. 2810417H13Rik 120.73 1254.26 RIKEN cDNA 2810417H13 gene
62. Rrm2 ENSMUSG00000020649 118.69 1233.07 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
63. Rpl18a ENSMUSG00000045128 111.75 1160.97 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
64. Gm14303 ENSMUSG00000081344 111.35 1156.81 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
65. Vim ENSMUSG00000026728 110.94 1152.55 vimentin [Source:MGI Symbol;Acc:MGI:98932]
66. Tubb2b ENSMUSG00000045136 107.68 1118.68 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
67. Tuba1a ENSMUSG00000072235 105.64 1097.49 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
68. Ncl ENSMUSG00000026234 105.23 1093.23 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
69. Son ENSMUSG00000022961 105.23 1093.23 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
70. U2af2 ENSMUSG00000030435 103.60 1076.30 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
71. Hnrnpa2b1 ENSMUSG00000004980 100.33 1042.33 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
72. Anp32b ENSMUSG00000028333 99.93 1038.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
73. Banf1 ENSMUSG00000024844 98.70 1025.39 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
74. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.29 1021.13 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
75. Gm14586 ENSMUSG00000083621 97.48 1012.72 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
76. Rps5 ENSMUSG00000012848 95.85 995.78 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
77. Ywhab ENSMUSG00000018326 93.40 970.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
78. Ywhae ENSMUSG00000020849 93.40 970.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
79. Nucks1 ENSMUSG00000026434 92.58 961.81 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
80. Rps9 ENSMUSG00000006333 91.77 953.40 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
81. Serbp1 ENSMUSG00000036371 91.36 949.14 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
82. Top1 ENSMUSG00000070544 91.36 949.14 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
83. Marcks ENSMUSG00000069662 90.95 944.88 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
84. Rpl8 ENSMUSG00000003970 90.55 940.72 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
85. H3f3b ENSMUSG00000016559 89.73 932.20 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
86. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 88.10 915.27 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
87. Sfpq ENSMUSG00000028820 87.69 911.01 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
88. Calm1 ENSMUSG00000001175 86.06 894.07 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
89. Grb10 ENSMUSG00000020176 86.06 894.07 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
90. Hnrnph1 ENSMUSG00000007850 86.06 894.07 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
91. Paics ENSMUSG00000029247 85.65 889.82 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
92. Calm2 ENSMUSG00000036438 84.84 881.40 calmodulin 2 [Source:MGI Symbol;Acc:MGI:103250]
93. Trim28 ENSMUSG00000005566 84.84 881.40 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. Cox8a ENSMUSG00000035885 82.80 860.21 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
95. Top2a ENSMUSG00000020914 82.80 860.21 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
96. Rpl26 ENSMUSG00000060938 82.39 855.95 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
97. Gm26924 Gm26924 81.57 847.43
98. Map1b ENSMUSG00000052727 81.16 843.17 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
99. H2afy ENSMUSG00000015937 80.76 839.01 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
100. Fkbp1a ENSMUSG00000032966 80.35 834.75 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA