Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E10_5_slice_1, section s7.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5851.95 60796.91 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2382.96 24756.98 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2281.34 23701.23 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Cytb ENSMUSG00000064370 1761.27 18298.14 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Co2 ENSMUSG00000064354 1276.15 13258.14 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Rnr1 ENSMUSG00000064337 1151.05 11958.46 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
7. mt-Nd1 ENSMUSG00000064341 1136.30 11805.22 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Co1 ENSMUSG00000064351 977.33 10153.65 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 946.19 9830.13 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd5 ENSMUSG00000064367 876.81 9109.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd4 ENSMUSG00000064363 769.19 7991.25 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 629.34 6538.32 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Eef1a1 ENSMUSG00000037742 617.86 6419.05 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Nd3 ENSMUSG00000064360 592.19 6152.36 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Rpsa ENSMUSG00000032518 453.43 4710.76 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Npm1 ENSMUSG00000057113 386.23 4012.61 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
17. Ybx1 ENSMUSG00000028639 327.78 3405.36 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
18. Hsp90ab1 ENSMUSG00000023944 323.96 3365.68 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
19. Hbb-y ENSMUSG00000052187 294.46 3059.20 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. mt-Co3 ENSMUSG00000064358 267.69 2781.08 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
21. Nedd4 ENSMUSG00000032216 265.50 2758.32 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Mdk ENSMUSG00000027239 261.68 2718.64 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Pkm ENSMUSG00000032294 254.03 2639.16 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Tmsb4x ENSMUSG00000049775 247.47 2571.01 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
25. Tuba1b ENSMUSG00000023004 233.27 2423.48 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Cfl1 ENSMUSG00000056201 227.26 2361.04 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Eif5a ENSMUSG00000078812 226.71 2355.33 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
28. Set ENSMUSG00000054766 222.89 2315.64 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
29. Ran ENSMUSG00000029430 222.34 2309.93 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
30. Eif4g2 ENSMUSG00000005610 182.46 1895.61 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Malat1 ENSMUSG00000092341 181.92 1890.00 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
32. Rpl23 ENSMUSG00000071415 181.37 1884.28 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Ldha ENSMUSG00000063229 173.18 1799.20 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
34. Atp5g3 ENSMUSG00000018770 170.99 1776.44 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
35. Hsp90aa1 ENSMUSG00000021270 170.99 1776.44 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
36. Tubb5 ENSMUSG00000001525 170.99 1776.44 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Rpl4 ENSMUSG00000032399 168.81 1753.80 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Rps20 ENSMUSG00000028234 167.71 1742.37 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Tpt1 ENSMUSG00000060126 166.62 1731.04 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Chchd2 ENSMUSG00000070493 163.89 1702.68 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. H19 ENSMUSG00000000031 161.70 1679.93 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
42. Rps3a1 ENSMUSG00000028081 161.16 1674.32 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
43. Rplp1 ENSMUSG00000007892 156.79 1628.92 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
44. Hnrnpc ENSMUSG00000060373 150.78 1566.48 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Rrm2 ENSMUSG00000020649 150.23 1560.77 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
46. Pcbp1 ENSMUSG00000051695 149.14 1549.44 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. Pabpc1 ENSMUSG00000022283 144.22 1498.33 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
48. Rpl39-ps ENSMUSG00000036305 144.22 1498.33 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
49. Hmga2 ENSMUSG00000056758 143.68 1492.72 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
50. Ubb ENSMUSG00000019505 139.31 1447.32 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
51. Eef1b2 ENSMUSG00000025967 138.76 1441.60 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Anp32b ENSMUSG00000028333 138.21 1435.89 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
53. U2af2 ENSMUSG00000030435 138.21 1435.89 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
54. Hmgn1 ENSMUSG00000040681 137.12 1424.56 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
55. Rps26 ENSMUSG00000025362 135.48 1407.52 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
56. 2810417H13Rik 134.39 1396.20 RIKEN cDNA 2810417H13 gene
57. Rps4x ENSMUSG00000031320 134.39 1396.20 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
58. Marcksl1 ENSMUSG00000047945 133.84 1390.49 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
59. Gm13340 ENSMUSG00000083563 130.02 1350.80 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
60. Rpl32 ENSMUSG00000057841 128.93 1339.48 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
61. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 125.10 1299.69 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
62. Eef2 ENSMUSG00000034994 122.37 1271.32 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
63. Ywhae ENSMUSG00000020849 119.64 1242.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
64. Top1 ENSMUSG00000070544 117.45 1220.21 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
65. Son ENSMUSG00000022961 116.36 1208.88 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
66. Igf2 ENSMUSG00000048583 115.27 1197.56 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
67. Rpl37 ENSMUSG00000041841 114.18 1186.24 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
68. Hnrnpa2b1 ENSMUSG00000004980 109.26 1135.12 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
69. Serbp1 ENSMUSG00000036371 104.89 1089.72 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
70. Marcks ENSMUSG00000069662 103.25 1072.68 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
71. Banf1 ENSMUSG00000024844 102.70 1066.97 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
72. Hnrnph1 ENSMUSG00000007850 102.70 1066.97 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
73. Vim ENSMUSG00000026728 102.70 1066.97 vimentin [Source:MGI Symbol;Acc:MGI:98932]
74. Rpl8 ENSMUSG00000003970 98.33 1021.57 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
75. Ccnd2 ENSMUSG00000000184 97.79 1015.96 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
76. Tuba1a ENSMUSG00000072235 97.79 1015.96 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
77. Trim28 ENSMUSG00000005566 96.69 1004.53 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
78. Rps5 ENSMUSG00000012848 96.15 998.92 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
79. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 96.15 998.92 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
80. Ddx3x ENSMUSG00000000787 95.60 993.20 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
81. Nucks1 ENSMUSG00000026434 95.06 987.59 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
82. Top2a ENSMUSG00000020914 95.06 987.59 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
83. Gm14586 ENSMUSG00000083621 94.51 981.88 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
84. Caprin1 ENSMUSG00000027184 92.32 959.13 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
85. Srsf3 ENSMUSG00000071172 92.32 959.13 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
86. Ncl ENSMUSG00000026234 91.78 953.52 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
87. Gm10800 ENSMUSG00000075014 91.23 947.80 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
88. Rps9 ENSMUSG00000006333 89.59 930.77 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
89. Slc25a5 ENSMUSG00000016319 89.59 930.77 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
90. Calm1 ENSMUSG00000001175 89.05 925.16 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
91. Paics ENSMUSG00000029247 88.50 919.44 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
92. Sfpq ENSMUSG00000028820 86.86 902.40 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
93. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 83.58 868.33 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
94. Dek ENSMUSG00000021377 83.04 862.72 DEK oncogene (DNA binding) [Source:MGI Symbol;Acc:MGI:1926209]
95. Tubb2b ENSMUSG00000045136 83.04 862.72 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
96. Txn1 ENSMUSG00000028367 82.49 857.00 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
97. Msi1 ENSMUSG00000054256 80.31 834.35 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
98. Ywhab ENSMUSG00000018326 80.31 834.35 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
99. Grb10 ENSMUSG00000020176 79.21 822.93 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
100. Map1b ENSMUSG00000052727 79.21 822.93 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA