Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s67.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5961.03 61932.35 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2136.48 22197.04 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2136.48 22197.04 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd1 ENSMUSG00000064341 1978.22 20552.79 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1740.83 18086.42 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd3 ENSMUSG00000064360 1582.57 16442.17 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
7. mt-Co1 ENSMUSG00000064351 1345.19 13975.90 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Ptma ENSMUSG00000026238 1134.18 11783.61 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
9. Actb ENSMUSG00000029580 1107.80 11509.53 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Nd5 ENSMUSG00000064367 975.92 10139.36 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Rnr1 ENSMUSG00000064337 949.54 9865.28 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
12. Eef1a1 ENSMUSG00000037742 896.79 9317.23 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Nd2 ENSMUSG00000064345 896.79 9317.23 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. mt-Nd4 ENSMUSG00000064363 896.79 9317.23 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
15. Mdk ENSMUSG00000027239 580.28 6028.84 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Igf2 ENSMUSG00000048583 422.02 4384.59 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Npm1 ENSMUSG00000057113 395.64 4110.52 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. Gm10800 ENSMUSG00000075014 369.27 3836.55 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
19. Ybx1 ENSMUSG00000028639 369.27 3836.55 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
20. Eef1b2 ENSMUSG00000025967 342.89 3562.47 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
21. mt-Co3 ENSMUSG00000064358 342.89 3562.47 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. Hmga2 ENSMUSG00000056758 316.51 3288.39 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Rpl23 ENSMUSG00000071415 316.51 3288.39 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
24. Gm13340 ENSMUSG00000083563 290.14 3014.42 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
25. Gm17132 ENSMUSG00000061331 290.14 3014.42 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
26. Ywhab ENSMUSG00000018326 263.76 2740.34 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
27. Cfl1 ENSMUSG00000056201 237.39 2466.37 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Son ENSMUSG00000022961 237.39 2466.37 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
29. Eif4g2 ENSMUSG00000005610 211.01 2192.30 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Peg3 ENSMUSG00000002265 211.01 2192.30 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
31. Rpsa ENSMUSG00000032518 211.01 2192.30 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
32. Wbp5 211.01 2192.30 WW domain binding protein 5
33. Flrt3 ENSMUSG00000051379 184.63 1918.22 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
34. Grb10 ENSMUSG00000020176 184.63 1918.22 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
35. H19 ENSMUSG00000000031 184.63 1918.22 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
36. Hnrnpa2b1 ENSMUSG00000004980 184.63 1918.22 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
37. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 184.63 1918.22 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
38. Malat1 ENSMUSG00000092341 184.63 1918.22 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
39. Set ENSMUSG00000054766 184.63 1918.22 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
40. Acta2 ENSMUSG00000035783 158.26 1644.25 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
41. Atp5a1 ENSMUSG00000025428, ENSMUSG00000116276 158.26 1644.25 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
42. Atp5g3 ENSMUSG00000018770 158.26 1644.25 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
43. Calm1 ENSMUSG00000001175 158.26 1644.25 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
44. Col1a1 ENSMUSG00000001506 158.26 1644.25 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
45. Fstl1 ENSMUSG00000022816 158.26 1644.25 follistatin-like 1 [Source:MGI Symbol;Acc:MGI:102793]
46. Fubp1 ENSMUSG00000028034 158.26 1644.25 far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
47. Gm21897 ENSMUSG00000094472 158.26 1644.25 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
48. Gpc3 ENSMUSG00000055653 158.26 1644.25 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
49. Ilf3 ENSMUSG00000032178 158.26 1644.25 interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
50. Meg3 ENSMUSG00000021268 158.26 1644.25 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
51. Pbx3 ENSMUSG00000038718 158.26 1644.25 pre B cell leukemia homeobox 3 [Source:MGI Symbol;Acc:MGI:97496]
52. Pkm ENSMUSG00000032294 158.26 1644.25 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
53. Rdx ENSMUSG00000032050 158.26 1644.25 radixin [Source:MGI Symbol;Acc:MGI:97887]
54. Rpl4 ENSMUSG00000032399 158.26 1644.25 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
55. Rplp1 ENSMUSG00000007892 158.26 1644.25 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
56. Rps26 ENSMUSG00000025362 158.26 1644.25 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
57. Tuba1b ENSMUSG00000023004 158.26 1644.25 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
58. Arl6ip1 ENSMUSG00000030654 131.88 1370.17 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
59. Chchd2 ENSMUSG00000070493 131.88 1370.17 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
60. Eef2 ENSMUSG00000034994 131.88 1370.17 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
61. Gnai2 ENSMUSG00000032562 131.88 1370.17 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
62. H2afv ENSMUSG00000041126 131.88 1370.17 H2A histone family, member V [Source:MGI Symbol;Acc:MGI:1924855]
63. Hsp90ab1 ENSMUSG00000023944 131.88 1370.17 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
64. Jund ENSMUSG00000071076, ENSMUSG00000110974 131.88 1370.17 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
65. Pdha1 ENSMUSG00000031299 131.88 1370.17 pyruvate dehydrogenase E1 alpha 1 [Source:MGI Symbol;Acc:MGI:97532]
66. Pycrl ENSMUSG00000022571 131.88 1370.17 pyrroline-5-carboxylate reductase-like [Source:MGI Symbol;Acc:MGI:1913444]
67. Rpl8 ENSMUSG00000003970 131.88 1370.17 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
68. Rps20 ENSMUSG00000028234 131.88 1370.17 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
69. Rtn4 ENSMUSG00000020458 131.88 1370.17 reticulon 4 [Source:MGI Symbol;Acc:MGI:1915835]
70. Sf3b1 ENSMUSG00000025982 131.88 1370.17 splicing factor 3b, subunit 1 [Source:MGI Symbol;Acc:MGI:1932339]
71. Tmsb4x ENSMUSG00000049775 131.88 1370.17 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
72. Top1 ENSMUSG00000070544 131.88 1370.17 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
73. Tubb5 ENSMUSG00000001525 131.88 1370.17 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
74. Ywhae ENSMUSG00000020849 131.88 1370.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
75. Atrx ENSMUSG00000031229 105.50 1096.10 ATRX, chromatin remodeler [Source:MGI Symbol;Acc:MGI:103067]
76. Banf1 ENSMUSG00000024844 105.50 1096.10 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
77. Caprin1 ENSMUSG00000027184 105.50 1096.10 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
78. Cnih1 ENSMUSG00000015759 105.50 1096.10 cornichon family AMPA receptor auxiliary protein 1 [Source:MGI Symbol;Acc:MGI:1277202]
79. Ctnnb1 ENSMUSG00000006932 105.50 1096.10 catenin (cadherin associated protein), beta 1 [Source:MGI Symbol;Acc:MGI:88276]
80. Dpf2 ENSMUSG00000024826 105.50 1096.10 D4, zinc and double PHD fingers family 2 [Source:MGI Symbol;Acc:MGI:109529]
81. Eif1 ENSMUSG00000035530 105.50 1096.10 eukaryotic translation initiation factor 1 [Source:MGI Symbol;Acc:MGI:105125]
82. Eif5 ENSMUSG00000021282 105.50 1096.10 eukaryotic translation initiation factor 5 [Source:MGI Symbol;Acc:MGI:95309]
83. Eif5a ENSMUSG00000078812 105.50 1096.10 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
84. Faim ENSMUSG00000032463 105.50 1096.10 Fas apoptotic inhibitory molecule [Source:MGI Symbol;Acc:MGI:1344387]
85. Fkbp1a ENSMUSG00000032966 105.50 1096.10 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
86. G3bp1 ENSMUSG00000018583 105.50 1096.10 GTPase activating protein (SH3 domain) binding protein 1 [Source:MGI Symbol;Acc:MGI:1351465]
87. Gm14303 ENSMUSG00000081344 105.50 1096.10 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
88. Gm14586 ENSMUSG00000083621 105.50 1096.10 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Gna13 ENSMUSG00000020611 105.50 1096.10 guanine nucleotide binding protein, alpha 13 [Source:MGI Symbol;Acc:MGI:95768]
90. Hmgcs1 ENSMUSG00000093930 105.50 1096.10 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 [Source:MGI Symbol;Acc:MGI:107592]
91. Hoxa5 ENSMUSG00000038253 105.50 1096.10 homeobox A5 [Source:MGI Symbol;Acc:MGI:96177]
92. Hspe1 ENSMUSG00000073676 105.50 1096.10 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
93. Igfbp4 ENSMUSG00000017493 105.50 1096.10 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
94. Lamp1 ENSMUSG00000031447 105.50 1096.10 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
95. Marcksl1 ENSMUSG00000047945 105.50 1096.10 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
96. Mex3a ENSMUSG00000074480 105.50 1096.10 mex3 RNA binding family member A [Source:MGI Symbol;Acc:MGI:1919890]
97. Nme1 ENSMUSG00000037601 105.50 1096.10 NME/NM23 nucleoside diphosphate kinase 1 [Source:MGI Symbol;Acc:MGI:97355]
98. Pard3 ENSMUSG00000025812 105.50 1096.10 par-3 family cell polarity regulator [Source:MGI Symbol;Acc:MGI:2135608]
99. Pcbp1 ENSMUSG00000051695 105.50 1096.10 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
100. Pfn1 ENSMUSG00000018293 105.50 1096.10 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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