Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s6.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5073.75 52711.95 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2639.64 27423.62 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2019.08 20976.53 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Cytb ENSMUSG00000064370 1817.02 18877.29 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Co2 ENSMUSG00000064354 1670.07 17350.61 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1251.56 13002.65 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1102.62 11455.29 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 920.42 9562.38 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd4 ENSMUSG00000064363 890.64 9252.99 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. mt-Rnr1 ENSMUSG00000064337 795.81 8267.79 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
11. mt-Nd5 ENSMUSG00000064367 767.52 7973.88 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 648.86 6741.10 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Eef1a1 ENSMUSG00000037742 578.37 6008.77 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Actb ENSMUSG00000029580 562.98 5848.88 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Rpsa ENSMUSG00000032518 405.60 4213.84 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Npm1 ENSMUSG00000057113 387.73 4028.19 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
17. mt-Co3 ENSMUSG00000064358 357.45 3713.60 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Hsp90ab1 ENSMUSG00000023944 313.76 3259.70 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
19. Ybx1 ENSMUSG00000028639 303.83 3156.54 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
20. Hbb-y ENSMUSG00000052187 257.66 2676.87 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Ran ENSMUSG00000029430 255.67 2656.19 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
22. Mdk ENSMUSG00000027239 252.20 2620.14 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Set ENSMUSG00000054766 248.23 2578.90 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
24. Nedd4 ENSMUSG00000032216 239.29 2486.02 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tuba1b ENSMUSG00000023004 228.37 2372.57 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Eif5a ENSMUSG00000078812 214.47 2228.16 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
27. Tubb5 ENSMUSG00000001525 213.47 2217.77 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Cfl1 ENSMUSG00000056201 210.00 2181.72 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Tmsb4x ENSMUSG00000049775 198.08 2057.88 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
30. Pkm ENSMUSG00000032294 186.67 1939.34 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Eif4g2 ENSMUSG00000005610 185.67 1928.95 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Atp5g3 ENSMUSG00000018770 184.68 1918.67 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
33. Hsp90aa1 ENSMUSG00000021270 179.22 1861.94 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
34. Gm13340 ENSMUSG00000083563 175.25 1820.70 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
35. Ldha ENSMUSG00000063229 172.77 1794.93 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
36. Malat1 ENSMUSG00000092341 172.77 1794.93 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
37. Rplp1 ENSMUSG00000007892 169.79 1763.97 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
38. Rpl23 ENSMUSG00000071415 168.30 1748.49 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Pabpc1 ENSMUSG00000022283 165.32 1717.53 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
40. Rpl4 ENSMUSG00000032399 161.35 1676.29 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Tpt1 ENSMUSG00000060126 159.86 1660.81 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Rrm2 ENSMUSG00000020649 151.42 1573.13 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
43. Eef1b2 ENSMUSG00000025967 149.93 1557.65 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Rps26 ENSMUSG00000025362 146.45 1521.49 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
45. Chchd2 ENSMUSG00000070493 144.96 1506.01 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Rps20 ENSMUSG00000028234 142.98 1485.44 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Rpl39-ps ENSMUSG00000036305 139.50 1449.29 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
48. 2810417H13Rik 137.52 1428.72 RIKEN cDNA 2810417H13 gene
49. Hnrnpc ENSMUSG00000060373 137.52 1428.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Rps3a1 ENSMUSG00000028081 136.03 1413.24 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
51. Ubb ENSMUSG00000019505 135.04 1402.95 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
52. Ccnd2 ENSMUSG00000000184 134.04 1392.56 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
53. Hmgn1 ENSMUSG00000040681 134.04 1392.56 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
54. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 134.04 1392.56 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
55. Anp32b ENSMUSG00000028333 131.56 1366.80 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
56. Pcbp1 ENSMUSG00000051695 130.57 1356.51 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
57. Rpl32 ENSMUSG00000057841 130.57 1356.51 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
58. Rps4x ENSMUSG00000031320 130.57 1356.51 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
59. Vim ENSMUSG00000026728 128.08 1330.64 vimentin [Source:MGI Symbol;Acc:MGI:98932]
60. Tuba1a ENSMUSG00000072235 124.11 1289.40 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
61. Hmga2 ENSMUSG00000056758 122.62 1273.92 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
62. Marcksl1 ENSMUSG00000047945 120.64 1253.35 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
63. Eef2 ENSMUSG00000034994 119.65 1243.06 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
64. Hnrnpa2b1 ENSMUSG00000004980 118.16 1227.58 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
65. Son ENSMUSG00000022961 118.16 1227.58 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
66. Tubb2b ENSMUSG00000045136 114.18 1186.23 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
67. H19 ENSMUSG00000000031 113.69 1181.14 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
68. Ywhae ENSMUSG00000020849 113.69 1181.14 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 109.72 1139.90 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Nucks1 ENSMUSG00000026434 107.23 1114.03 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
71. Map1b ENSMUSG00000052727 105.25 1093.46 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
72. Serbp1 ENSMUSG00000036371 100.28 1041.82 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
73. U2af2 ENSMUSG00000030435 99.79 1036.73 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
74. Marcks ENSMUSG00000069662 99.29 1031.54 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
75. Rpl37 ENSMUSG00000041841 98.79 1026.34 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
76. Banf1 ENSMUSG00000024844 97.30 1010.86 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
77. Gm14586 ENSMUSG00000083621 96.81 1005.77 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
78. Sfpq ENSMUSG00000028820 96.81 1005.77 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
79. Igf2 ENSMUSG00000048583 96.31 1000.58 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
80. Top2a ENSMUSG00000020914 95.82 995.49 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
81. Gm14303 ENSMUSG00000081344 95.32 990.29 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
82. Rps5 ENSMUSG00000012848 93.83 974.81 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
83. Ncl ENSMUSG00000026234 90.35 938.66 nucleolin [Source:MGI Symbol;Acc:MGI:97286]
84. Fscn1 ENSMUSG00000029581 88.87 923.28 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
85. Hnrnpk ENSMUSG00000021546 88.37 918.09 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
86. Rps9 ENSMUSG00000006333 87.38 907.80 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
87. Ywhab ENSMUSG00000018326 87.38 907.80 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
88. Rpl8 ENSMUSG00000003970 86.88 902.61 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
89. Paics ENSMUSG00000029247 86.38 897.41 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
90. Grb10 ENSMUSG00000020176 85.89 892.32 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
91. Hnrnpa0 ENSMUSG00000007836 85.89 892.32 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
92. Slc25a5 ENSMUSG00000016319 84.89 881.93 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
93. Caprin1 ENSMUSG00000027184 83.90 871.65 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
94. Gnb2l1 Gnb2l1 82.91 861.36
95. Top1 ENSMUSG00000070544 82.41 856.17 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
96. Rpl13a ENSMUSG00000074129 81.91 850.98 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
97. Ddx5 ENSMUSG00000020719 81.42 845.88 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Kpnb1 ENSMUSG00000001440 80.92 840.69 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Rbm25 ENSMUSG00000010608 80.43 835.60 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
100. Sf3b4 ENSMUSG00000068856 80.43 835.60 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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