Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s57.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5543.40 57589.87 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 2042.60 21220.38 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2003.64 20815.63 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1803.27 18734.01 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. Ptma ENSMUSG00000026238 1730.92 17982.37 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Co2 ENSMUSG00000064354 1680.83 17461.99 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Rnr1 ENSMUSG00000064337 1447.07 15033.48 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
8. mt-Nd2 ENSMUSG00000064345 1163.22 12084.59 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. Gm10800 ENSMUSG00000075014 1113.13 11564.20 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
10. mt-Co1 ENSMUSG00000064351 1085.30 11275.08 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 1074.17 11159.45 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 890.51 9251.43 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd5 ENSMUSG00000064367 845.98 8788.81 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. mt-Nd3 ENSMUSG00000064360 779.19 8094.93 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Eef1a1 ENSMUSG00000037742 562.13 5839.92 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 439.69 4567.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Rpsa ENSMUSG00000032518 422.99 4394.40 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. mt-Co3 ENSMUSG00000064358 406.29 4220.91 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Npm1 ENSMUSG00000057113 389.60 4047.52 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. H19 ENSMUSG00000000031 356.20 3700.53 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
21. Gm26870 ENSMUSG00000097312 339.51 3527.14 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
22. Mdk ENSMUSG00000027239 317.24 3295.78 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Gm17132 ENSMUSG00000061331 289.41 3006.65 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
24. Rpl23 ENSMUSG00000071415 278.28 2891.03 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
25. Peg3 ENSMUSG00000002265 244.89 2544.14 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
26. Nedd4 ENSMUSG00000032216 239.32 2486.27 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Hsp90ab1 ENSMUSG00000023944 228.19 2370.64 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. Rps3a1 ENSMUSG00000028081 211.50 2197.25 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
29. Set ENSMUSG00000054766 211.50 2197.25 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
30. Gm13340 ENSMUSG00000083563 200.36 2081.52 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
31. Cfl1 ENSMUSG00000056201 194.80 2023.76 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Ran ENSMUSG00000029430 194.80 2023.76 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
33. Ybx1 ENSMUSG00000028639 183.67 1908.13 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
34. Marcks ENSMUSG00000069662 178.10 1850.26 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
35. Hmgn1 ENSMUSG00000040681 166.97 1734.64 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
36. Eif4g2 ENSMUSG00000005610 155.84 1619.01 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Rpl4 ENSMUSG00000032399 155.84 1619.01 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Rps20 ENSMUSG00000028234 155.84 1619.01 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Rps4x ENSMUSG00000031320 155.84 1619.01 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
40. Tpt1 ENSMUSG00000060126 155.84 1619.01 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Eef1b2 ENSMUSG00000025967 150.27 1561.14 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Grb10 ENSMUSG00000020176 150.27 1561.14 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Tmsb4x ENSMUSG00000049775 150.27 1561.14 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
44. Tuba1b ENSMUSG00000023004 150.27 1561.14 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
45. Eif5a ENSMUSG00000078812 144.71 1503.38 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
46. Pabpc1 ENSMUSG00000022283 144.71 1503.38 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
47. Rplp1 ENSMUSG00000007892 133.58 1387.75 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
48. Serbp1 ENSMUSG00000036371 133.58 1387.75 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
49. Chchd2 ENSMUSG00000070493 128.01 1329.88 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
50. Ngfrap1 128.01 1329.88 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
51. Rpl32 ENSMUSG00000057841 128.01 1329.88 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
52. Paics ENSMUSG00000029247 122.44 1272.02 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
53. Rpl37 ENSMUSG00000041841 122.44 1272.02 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
54. Son ENSMUSG00000022961 122.44 1272.02 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
55. Vim ENSMUSG00000026728 122.44 1272.02 vimentin [Source:MGI Symbol;Acc:MGI:98932]
56. Hmga2 ENSMUSG00000056758 116.88 1214.26 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
57. Hsp90aa1 ENSMUSG00000021270 116.88 1214.26 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Rps26 ENSMUSG00000025362 116.88 1214.26 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
59. Ubb ENSMUSG00000019505 116.88 1214.26 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
60. 2810417H13Rik 111.31 1156.39 RIKEN cDNA 2810417H13 gene
61. Malat1 ENSMUSG00000092341 111.31 1156.39 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
62. Rpl39-ps ENSMUSG00000036305 111.31 1156.39 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
63. Rpl7 ENSMUSG00000043716 111.31 1156.39 ribosomal protein L7 [Source:MGI Symbol;Acc:MGI:98073]
64. Tubb5 ENSMUSG00000001525 111.31 1156.39 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
65. Atp5g3 ENSMUSG00000018770 105.75 1098.63 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
66. Ddx3x ENSMUSG00000000787 105.75 1098.63 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
67. Gm14303 ENSMUSG00000081344 105.75 1098.63 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
68. Gm8292 ENSMUSG00000100215 105.75 1098.63 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
69. Gnb2l1 Gnb2l1 105.75 1098.63
70. Morf4l2 ENSMUSG00000031422 105.75 1098.63 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
71. Pbx1 ENSMUSG00000052534 105.75 1098.63 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
72. Gm21897 ENSMUSG00000094472 100.18 1040.76 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
73. Hnrnpc ENSMUSG00000060373 100.18 1040.76 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
74. Marcksl1 ENSMUSG00000047945 100.18 1040.76 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
75. Pkm ENSMUSG00000032294 100.18 1040.76 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
76. Rpl13a ENSMUSG00000074129 100.18 1040.76 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
77. Wbp5 100.18 1040.76 WW domain binding protein 5
78. Ddx5 ENSMUSG00000020719 94.62 983.00 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Kpnb1 ENSMUSG00000001440 94.62 983.00 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
80. Nucks1 ENSMUSG00000026434 94.62 983.00 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
81. Rpl18a ENSMUSG00000045128 94.62 983.00 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
82. Rpl36a ENSMUSG00000079435 94.62 983.00 ribosomal protein L36A [Source:MGI Symbol;Acc:MGI:1201789]
83. Tpm4 ENSMUSG00000031799 94.62 983.00 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
84. Dynll1 ENSMUSG00000009013 89.05 925.13 dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]
85. Gm14586 ENSMUSG00000083621 89.05 925.13 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
86. Gm17131 ENSMUSG00000085328 89.05 925.13 predicted gene 17131 [Source:MGI Symbol;Acc:MGI:4937958]
87. Gm5805 ENSMUSG00000061848 89.05 925.13 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
88. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 89.05 925.13 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
89. Mapre1 ENSMUSG00000027479 89.05 925.13 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
90. Rbm25 ENSMUSG00000010608 89.05 925.13 RNA binding motif protein 25 [Source:MGI Symbol;Acc:MGI:1914289]
91. Rpl26 ENSMUSG00000060938 89.05 925.13 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
92. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 89.05 925.13 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
93. Sfrp1 ENSMUSG00000031548 89.05 925.13 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
94. Tceal8 ENSMUSG00000051579 89.05 925.13 transcription elongation factor A (SII)-like 8 [Source:MGI Symbol;Acc:MGI:1913934]
95. Tuba1a ENSMUSG00000072235 89.05 925.13 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
96. Ywhab ENSMUSG00000018326 89.05 925.13 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
97. Calm1 ENSMUSG00000001175 83.48 867.27 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
98. Csde1 ENSMUSG00000068823 83.48 867.27 cold shock domain containing E1, RNA binding [Source:MGI Symbol;Acc:MGI:92356]
99. Eif4b ENSMUSG00000058655 83.48 867.27 eukaryotic translation initiation factor 4B [Source:MGI Symbol;Acc:MGI:95304]
100. Fkbp1a ENSMUSG00000032966 83.48 867.27 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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