Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s56.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 3773.92 39214.74 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Gm10800 ENSMUSG00000075014 2778.44 28870.72 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
3. mt-Cytb ENSMUSG00000064370 2460.48 25566.81 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Atp6 ENSMUSG00000064357 2424.82 25196.26 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 1990.97 20688.14 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 1943.42 20194.05 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Nd1 ENSMUSG00000064341 1652.21 17168.09 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Rnr1 ENSMUSG00000064337 1295.61 13462.66 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
9. mt-Co1 ENSMUSG00000064351 1206.47 12536.41 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd2 ENSMUSG00000064345 1078.69 11208.65 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Nd4 ENSMUSG00000064363 1007.37 10467.57 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Gm17132 ENSMUSG00000061331 974.68 10127.88 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
13. mt-Nd3 ENSMUSG00000064360 968.74 10066.16 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Gm26870 ENSMUSG00000097312 835.02 8676.68 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
15. Actb ENSMUSG00000029580 754.78 7842.91 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. mt-Nd5 ENSMUSG00000064367 624.03 6484.29 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. Eef1a1 ENSMUSG00000037742 606.21 6299.12 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Igf2 ENSMUSG00000048583 454.65 4724.26 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. H19 ENSMUSG00000000031 407.11 4230.27 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
20. Mdk ENSMUSG00000027239 392.25 4075.86 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Rpsa ENSMUSG00000032518 356.59 3705.32 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Gm21897 ENSMUSG00000094472 341.73 3550.91 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
23. mt-Co3 ENSMUSG00000064358 341.73 3550.91 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
24. Npm1 ENSMUSG00000057113 312.02 3242.19 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Gm13936 ENSMUSG00000085444 258.53 2686.38 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
26. Hsp90ab1 ENSMUSG00000023944 228.81 2377.56 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Tuba1b ENSMUSG00000023004 225.84 2346.70 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Gm13340 ENSMUSG00000083563 219.90 2284.98 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
29. Cfl1 ENSMUSG00000056201 213.95 2223.15 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Eif5a ENSMUSG00000078812 202.07 2099.71 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
31. Peg3 ENSMUSG00000002265 202.07 2099.71 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. Nedd4 ENSMUSG00000032216 190.18 1976.16 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Gm17131 ENSMUSG00000085328 187.21 1945.30 predicted gene 17131 [Source:MGI Symbol;Acc:MGI:4937958]
34. Rpl23 ENSMUSG00000071415 184.24 1914.43 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
35. Rplp1 ENSMUSG00000007892 175.32 1821.75 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
36. Rps3a1 ENSMUSG00000028081 169.38 1760.02 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
37. Eef1b2 ENSMUSG00000025967 160.47 1667.44 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
38. Hmga2 ENSMUSG00000056758 154.52 1605.61 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
39. Chchd2 ENSMUSG00000070493 148.58 1543.89 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Eif4g2 ENSMUSG00000005610 148.58 1543.89 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Rps5 ENSMUSG00000012848 148.58 1543.89 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
42. Hsp90aa1 ENSMUSG00000021270 145.61 1513.03 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
43. Malat1 ENSMUSG00000092341 145.61 1513.03 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
44. Ybx1 ENSMUSG00000028639 145.61 1513.03 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Son ENSMUSG00000022961 142.64 1482.17 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
46. Hmgn1 ENSMUSG00000040681 139.66 1451.20 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
47. Ran ENSMUSG00000029430 139.66 1451.20 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
48. Rpl32 ENSMUSG00000057841 139.66 1451.20 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
49. Sfrp1 ENSMUSG00000031548 139.66 1451.20 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
50. Pcbp1 ENSMUSG00000051695 136.69 1420.34 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
51. Rps4x ENSMUSG00000031320 136.69 1420.34 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
52. Rps26 ENSMUSG00000025362 133.72 1389.48 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
53. Tmsb4x ENSMUSG00000049775 133.72 1389.48 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
54. Tubb5 ENSMUSG00000001525 133.72 1389.48 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
55. Ubb ENSMUSG00000019505 133.72 1389.48 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
56. Atp5g3 ENSMUSG00000018770 130.75 1358.62 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
57. Col1a1 ENSMUSG00000001506 130.75 1358.62 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
58. Wbp5 130.75 1358.62 WW domain binding protein 5
59. Rpl4 ENSMUSG00000032399 127.78 1327.76 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
60. Rpl37 ENSMUSG00000041841 124.81 1296.90 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
61. Hnrnpa2b1 ENSMUSG00000004980 121.84 1266.04 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
62. Set ENSMUSG00000054766 121.84 1266.04 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
63. Gm14586 ENSMUSG00000083621 118.86 1235.07 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
64. Meg3 ENSMUSG00000021268 118.86 1235.07 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
65. Tpt1 ENSMUSG00000060126 112.92 1173.35 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
66. Hnrnpc ENSMUSG00000060373 109.95 1142.49 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
67. Rps20 ENSMUSG00000028234 109.95 1142.49 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
68. Igfbp5 ENSMUSG00000026185 106.98 1111.63 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
69. H3f3b ENSMUSG00000016559 104.01 1080.77 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
70. Rpl18a ENSMUSG00000045128 104.01 1080.77 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
71. Rpl39-ps ENSMUSG00000036305 104.01 1080.77 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
72. Lamp1 ENSMUSG00000031447 101.03 1049.80 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
73. Ngfrap1 101.03 1049.80 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
74. Ago2 ENSMUSG00000036698 98.06 1018.94 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
75. Gm17555 ENSMUSG00000090353 98.06 1018.94 predicted gene, 17555 [Source:MGI Symbol;Acc:MGI:4937189]
76. Gm5805 ENSMUSG00000061848 98.06 1018.94 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
77. Grb10 ENSMUSG00000020176 98.06 1018.94 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
78. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 98.06 1018.94 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
79. Marcks ENSMUSG00000069662 98.06 1018.94 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
80. Eef2 ENSMUSG00000034994 95.09 988.08 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
81. Tpm1 ENSMUSG00000032366 95.09 988.08 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
82. Anp32b ENSMUSG00000028333 92.12 957.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
83. Fkbp1a ENSMUSG00000032966 92.12 957.22 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
84. Gm8292 ENSMUSG00000100215 92.12 957.22 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
85. Morf4l1 ENSMUSG00000062270 89.15 926.36 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
86. Rps9 ENSMUSG00000006333 89.15 926.36 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
87. Ywhab ENSMUSG00000018326 89.15 926.36 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
88. Pkm ENSMUSG00000032294 86.18 895.49 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
89. Tmsb10 ENSMUSG00000079523 86.18 895.49 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
90. Vim ENSMUSG00000026728 86.18 895.49 vimentin [Source:MGI Symbol;Acc:MGI:98932]
91. Gm10717 ENSMUSG00000095891 83.20 864.53 predicted gene 10717 [Source:MGI Symbol;Acc:MGI:3642031]
92. Itgb1 ENSMUSG00000025809 83.20 864.53 integrin beta 1 (fibronectin receptor beta) [Source:MGI Symbol;Acc:MGI:96610]
93. Txn1 ENSMUSG00000028367 83.20 864.53 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
94. Atp5a1 ENSMUSG00000025428, ENSMUSG00000116276 80.23 833.67 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
95. Fgd4 ENSMUSG00000022788 80.23 833.67 FYVE, RhoGEF and PH domain containing 4 [Source:MGI Symbol;Acc:MGI:2183747]
96. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 80.23 833.67 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
97. Sfpq ENSMUSG00000028820 80.23 833.67 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
98. Gm20469 Gm20469 77.26 802.81
99. Paics ENSMUSG00000029247 77.26 802.81 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
100. Serbp1 ENSMUSG00000036371 77.26 802.81 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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