Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s5.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4890.40 50811.35 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2590.09 26911.09 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2358.36 24503.41 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Cytb ENSMUSG00000064370 2040.05 21196.16 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Co2 ENSMUSG00000064354 1435.82 14918.20 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1306.17 13571.13 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1078.80 11208.75 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr1 ENSMUSG00000064337 1046.87 10877.00 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
9. mt-Nd2 ENSMUSG00000064345 819.99 8519.71 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd4 ENSMUSG00000064363 787.57 8182.87 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 786.61 8172.89 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Eef1a1 ENSMUSG00000037742 648.73 6740.32 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Nd3 ENSMUSG00000064360 631.80 6564.41 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 573.75 5961.27 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Rpsa ENSMUSG00000032518 444.58 4619.19 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Npm1 ENSMUSG00000057113 355.09 3689.39 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
17. Mdk ENSMUSG00000027239 301.87 3136.44 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Hsp90ab1 ENSMUSG00000023944 287.36 2985.68 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
19. Ybx1 ENSMUSG00000028639 283.49 2945.47 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
20. Hbb-y ENSMUSG00000052187 276.71 2875.02 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Eif5a ENSMUSG00000078812 262.20 2724.26 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
22. mt-Co3 ENSMUSG00000064358 261.23 2714.18 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
23. Ran ENSMUSG00000029430 253.01 2628.78 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
24. Nedd4 ENSMUSG00000032216 238.50 2478.02 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tmsb4x ENSMUSG00000049775 218.66 2271.88 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
26. Tuba1b ENSMUSG00000023004 217.21 2256.82 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Set ENSMUSG00000054766 211.89 2201.54 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
28. Pkm ENSMUSG00000032294 209.95 2181.38 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Cfl1 ENSMUSG00000056201 208.50 2166.32 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Rpl23 ENSMUSG00000071415 194.96 2025.64 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
31. Hsp90aa1 ENSMUSG00000021270 192.06 1995.51 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
32. Eif4g2 ENSMUSG00000005610 183.35 1905.01 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Marcksl1 ENSMUSG00000047945 177.54 1844.64 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
34. Rplp1 ENSMUSG00000007892 175.12 1819.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
35. Rps20 ENSMUSG00000028234 173.67 1804.43 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
36. Ldha ENSMUSG00000063229 172.70 1794.36 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
37. Atp5g3 ENSMUSG00000018770 172.22 1789.37 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Rps3a1 ENSMUSG00000028081 172.22 1789.37 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
39. Rrm2 ENSMUSG00000020649 172.22 1789.37 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
40. Pcbp1 ENSMUSG00000051695 169.80 1764.23 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
41. Tubb5 ENSMUSG00000001525 168.83 1754.15 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
42. Rpl4 ENSMUSG00000032399 162.06 1683.81 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Hnrnpc ENSMUSG00000060373 161.09 1673.73 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Chchd2 ENSMUSG00000070493 159.64 1658.66 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. Rps26 ENSMUSG00000025362 153.35 1593.31 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
46. Eef1b2 ENSMUSG00000025967 149.48 1553.10 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Rps4x ENSMUSG00000031320 149.48 1553.10 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
48. Gm13340 ENSMUSG00000083563 149.00 1548.11 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
49. Pabpc1 ENSMUSG00000022283 145.13 1507.90 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
50. Hmgn1 ENSMUSG00000040681 144.16 1497.83 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
51. Rpl39-ps ENSMUSG00000036305 140.29 1457.62 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
52. Tpt1 ENSMUSG00000060126 139.81 1452.63 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
53. 2810417H13Rik 137.87 1432.47 RIKEN cDNA 2810417H13 gene
54. Rpl32 ENSMUSG00000057841 134.97 1402.34 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
55. Ccnd2 ENSMUSG00000000184 134.00 1392.26 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
56. Ubb ENSMUSG00000019505 129.65 1347.07 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
57. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 126.75 1316.93 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
58. Rpl37 ENSMUSG00000041841 126.26 1311.84 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
59. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 120.94 1256.57 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
60. Hnrnpa2b1 ENSMUSG00000004980 119.01 1236.52 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
61. Anp32b ENSMUSG00000028333 117.07 1216.36 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
62. U2af2 ENSMUSG00000030435 115.62 1201.29 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
63. Vim ENSMUSG00000026728 115.62 1201.29 vimentin [Source:MGI Symbol;Acc:MGI:98932]
64. Marcks ENSMUSG00000069662 114.17 1186.23 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
65. Hmga2 ENSMUSG00000056758 113.69 1181.24 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
66. Serbp1 ENSMUSG00000036371 112.23 1166.07 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
67. Rpl18a ENSMUSG00000045128 111.75 1161.08 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
68. Malat1 ENSMUSG00000092341 108.85 1130.95 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
69. Msi1 ENSMUSG00000054256 107.88 1120.88 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
70. Ywhae ENSMUSG00000020849 107.88 1120.88 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
71. Hba-x ENSMUSG00000055609 105.95 1100.82 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
72. Banf1 ENSMUSG00000024844 102.56 1065.60 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
73. Map1b ENSMUSG00000052727 100.62 1045.44 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
74. H19 ENSMUSG00000000031 100.14 1040.46 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
75. Ywhaz ENSMUSG00000022285 99.66 1035.47 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
76. Trim28 ENSMUSG00000005566 99.17 1030.38 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
77. Nucks1 ENSMUSG00000026434 98.69 1025.39 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
78. Son ENSMUSG00000022961 98.20 1020.30 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
79. Ywhab ENSMUSG00000018326 97.24 1010.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
80. Crabp1 ENSMUSG00000032291 96.27 1000.25 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
81. Hnrnph1 ENSMUSG00000007850 95.30 990.17 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
82. Rps9 ENSMUSG00000006333 94.33 980.09 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
83. Gm14586 ENSMUSG00000083621 93.85 975.10 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
84. Tuba1a ENSMUSG00000072235 93.85 975.10 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
85. Rps5 ENSMUSG00000012848 93.37 970.12 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
86. Rpl8 ENSMUSG00000003970 92.88 965.03 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
87. Fkbp1a ENSMUSG00000032966 92.40 960.04 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
88. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 91.92 955.05 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
89. Paics ENSMUSG00000029247 91.43 949.96 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
90. Ddx5 ENSMUSG00000020719 90.95 944.97 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
91. Fscn1 ENSMUSG00000029581 89.50 929.91 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
92. Gm14303 ENSMUSG00000081344 89.01 924.82 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
93. Tubb2b ENSMUSG00000045136 88.05 914.84 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
94. Hnrnpa0 ENSMUSG00000007836 87.08 904.76 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
95. Sf3b4 ENSMUSG00000068856 84.66 879.62 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
96. H2afy ENSMUSG00000015937 83.21 864.55 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
97. Rpl26 ENSMUSG00000060938 83.21 864.55 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
98. Sfpq ENSMUSG00000028820 83.21 864.55 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
99. Eef2 ENSMUSG00000034994 82.72 859.46 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
100. Top1 ENSMUSG00000070544 82.72 859.46 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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