Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s48.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5853.24 60813.55 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 3507.24 36439.25 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2850.61 29617.05 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Co2 ENSMUSG00000064354 1855.48 19277.92 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1480.94 15386.56 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co1 ENSMUSG00000064351 1429.22 14849.20 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
7. Ptma ENSMUSG00000026238 1391.61 14458.44 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
8. mt-Nd4 ENSMUSG00000064363 1352.43 14051.37 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
9. mt-Rnr1 ENSMUSG00000064337 1255.27 13041.91 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
10. mt-Nd2 ENSMUSG00000064345 1136.17 11804.49 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Nd5 ENSMUSG00000064367 1018.64 10583.39 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Actb ENSMUSG00000029580 796.10 8271.26 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Gm10800 ENSMUSG00000075014 716.18 7440.91 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
14. Igf2 ENSMUSG00000048583 684.84 7115.30 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Nd3 ENSMUSG00000064360 609.61 6333.68 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. Eef1a1 ENSMUSG00000037742 550.06 5714.97 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Mdk ENSMUSG00000027239 531.26 5519.64 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Gm17132 ENSMUSG00000061331 382.38 3972.82 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
19. Rpsa ENSMUSG00000032518 382.38 3972.82 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. H19 ENSMUSG00000000031 380.81 3956.51 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
21. mt-Co3 ENSMUSG00000064358 358.87 3728.56 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. Malat1 ENSMUSG00000092341 299.32 3109.85 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
23. Nedd4 ENSMUSG00000032216 277.38 2881.90 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Npm1 ENSMUSG00000057113 274.25 2849.38 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Peg3 ENSMUSG00000002265 253.88 2637.74 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
26. Hsp90ab1 ENSMUSG00000023944 250.74 2605.12 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Cfl1 ENSMUSG00000056201 224.10 2328.34 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Ybx1 ENSMUSG00000028639 219.40 2279.51 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Gm13340 ENSMUSG00000083563 213.13 2214.36 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
30. Tubb5 ENSMUSG00000001525 205.29 2132.91 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Col1a1 ENSMUSG00000001506 197.46 2051.55 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
32. Tuba1b ENSMUSG00000023004 177.09 1839.92 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
33. Hmga2 ENSMUSG00000056758 175.52 1823.60 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
34. Rps3a1 ENSMUSG00000028081 175.52 1823.60 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
35. Eif5a ENSMUSG00000078812 169.25 1758.46 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Rpl23 ENSMUSG00000071415 167.68 1742.15 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
37. Set ENSMUSG00000054766 162.98 1693.32 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Ubb ENSMUSG00000019505 148.88 1546.82 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
39. Eef1b2 ENSMUSG00000025967 145.74 1514.20 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
40. Col3a1 ENSMUSG00000026043 137.91 1432.85 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
41. Eif4g2 ENSMUSG00000005610 137.91 1432.85 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. Grb10 ENSMUSG00000020176 126.94 1318.87 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Meg3 ENSMUSG00000021268 126.94 1318.87 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
44. Gm21897 ENSMUSG00000094472 125.37 1302.56 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
45. Wbp5 125.37 1302.56 WW domain binding protein 5
46. Chchd2 ENSMUSG00000070493 123.80 1286.25 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Sfrp1 ENSMUSG00000031548 123.80 1286.25 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
48. Atp5g3 ENSMUSG00000018770 120.67 1253.73 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Hnrnpc ENSMUSG00000060373 120.67 1253.73 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Pcbp1 ENSMUSG00000051695 119.10 1237.42 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
51. Ran ENSMUSG00000029430 119.10 1237.42 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
52. Rps26 ENSMUSG00000025362 117.53 1221.10 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
53. Hmgn1 ENSMUSG00000040681 115.97 1204.90 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
54. Rpl32 ENSMUSG00000057841 115.97 1204.90 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
55. Rplp1 ENSMUSG00000007892 114.40 1188.58 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
56. Rps4x ENSMUSG00000031320 114.40 1188.58 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
57. Tpm1 ENSMUSG00000032366 112.83 1172.27 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
58. Marcks ENSMUSG00000069662 111.27 1156.06 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
59. Pabpc1 ENSMUSG00000022283 109.70 1139.75 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
60. Ywhab ENSMUSG00000018326 109.70 1139.75 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
61. Rpl4 ENSMUSG00000032399 108.13 1123.44 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
62. Gm13936 ENSMUSG00000085444 105.00 1090.92 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
63. Tpt1 ENSMUSG00000060126 105.00 1090.92 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
64. Hsp90aa1 ENSMUSG00000021270 103.43 1074.61 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
65. Pkm ENSMUSG00000032294 103.43 1074.61 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
66. Rpl39-ps ENSMUSG00000036305 100.30 1042.09 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
67. Tmsb4x ENSMUSG00000049775 98.73 1025.78 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
68. Ngfrap1 97.16 1009.47 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
69. Ywhaz ENSMUSG00000022285 97.16 1009.47 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
70. Gm26870 ENSMUSG00000097312 95.60 993.26 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
71. Gnb2l1 Gnb2l1 95.60 993.26
72. Marcksl1 ENSMUSG00000047945 95.60 993.26 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
73. 2810417H13Rik 92.46 960.63 RIKEN cDNA 2810417H13 gene
74. Col1a2 ENSMUSG00000029661 92.46 960.63 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
75. Igfbp5 ENSMUSG00000026185 92.46 960.63 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
76. Anp32b ENSMUSG00000028333 90.89 944.32 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
77. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 89.33 928.11 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
78. Hnrnph1 ENSMUSG00000007850 87.76 911.80 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
79. Pfn1 ENSMUSG00000018293 87.76 911.80 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
80. Rps20 ENSMUSG00000028234 87.76 911.80 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
81. Hnrnpa2b1 ENSMUSG00000004980 86.19 895.49 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
82. Pbx1 ENSMUSG00000052534 86.19 895.49 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
83. Rps9 ENSMUSG00000006333 86.19 895.49 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
84. Fn1 ENSMUSG00000026193 84.63 879.28 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
85. Gm17131 ENSMUSG00000085328 84.63 879.28 predicted gene 17131 [Source:MGI Symbol;Acc:MGI:4937958]
86. Banf1 ENSMUSG00000024844 83.06 862.97 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
87. Son ENSMUSG00000022961 83.06 862.97 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
88. Crabp1 ENSMUSG00000032291 81.49 846.66 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
89. Fscn1 ENSMUSG00000029581 81.49 846.66 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
90. H3f3b ENSMUSG00000016559 81.49 846.66 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
91. Tuba1a ENSMUSG00000072235 81.49 846.66 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
92. Ywhae ENSMUSG00000020849 81.49 846.66 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
93. Gas1 ENSMUSG00000052957 79.92 830.35 growth arrest specific 1 [Source:MGI Symbol;Acc:MGI:95655]
94. Tsc22d1 ENSMUSG00000022010 79.92 830.35 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
95. Vim ENSMUSG00000026728 79.92 830.35 vimentin [Source:MGI Symbol;Acc:MGI:98932]
96. Eef1g ENSMUSG00000071644 78.36 814.14 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
97. Morf4l1 ENSMUSG00000062270 78.36 814.14 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
98. Ddx3x ENSMUSG00000000787 76.79 797.83 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
99. Rbms1 ENSMUSG00000026970 76.79 797.83 RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
100. Rpl8 ENSMUSG00000003970 75.22 781.52 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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