Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s4.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5018.60 52144.45 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2621.05 27233.33 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2355.68 24476.07 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Cytb ENSMUSG00000064370 1800.48 18707.41 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Co2 ENSMUSG00000064354 1443.21 14995.29 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1266.48 13159.03 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Rnr1 ENSMUSG00000064337 1259.95 13091.18 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
8. mt-Nd2 ENSMUSG00000064345 1050.60 10915.98 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1050.05 10910.27 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 1038.09 10786.00 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 833.62 8661.51 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. mt-Nd3 ENSMUSG00000064360 677.56 7040.01 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 584.03 6068.21 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Eef1a1 ENSMUSG00000037742 568.26 5904.36 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Hbb-y ENSMUSG00000052187 463.31 4813.90 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Rpsa ENSMUSG00000032518 426.87 4435.28 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
17. Npm1 ENSMUSG00000057113 312.68 3248.82 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. Mdk ENSMUSG00000027239 295.28 3068.03 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Ybx1 ENSMUSG00000028639 294.19 3056.70 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
20. Hsp90ab1 ENSMUSG00000023944 278.96 2898.46 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
21. mt-Co3 ENSMUSG00000064358 273.52 2841.94 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
22. Eif5a ENSMUSG00000078812 272.98 2836.33 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
23. Tuba1b ENSMUSG00000023004 261.56 2717.67 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Nedd4 ENSMUSG00000032216 244.16 2536.88 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Pkm ENSMUSG00000032294 243.62 2531.27 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Cfl1 ENSMUSG00000056201 238.18 2474.75 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Ran ENSMUSG00000029430 216.43 2248.76 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
28. Tmsb4x ENSMUSG00000049775 208.27 2163.97 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
29. Rplp1 ENSMUSG00000007892 191.96 1994.51 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
30. Set ENSMUSG00000054766 191.41 1988.80 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
31. Rpl23 ENSMUSG00000071415 187.06 1943.60 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
32. Rrm2 ENSMUSG00000020649 187.06 1943.60 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
33. Eif4g2 ENSMUSG00000005610 185.97 1932.27 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Rps26 ENSMUSG00000025362 182.17 1892.79 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
35. Tubb5 ENSMUSG00000001525 179.45 1864.53 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
36. Ldha ENSMUSG00000063229 178.91 1858.92 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
37. Rps3a1 ENSMUSG00000028081 174.01 1808.01 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
38. Tpt1 ENSMUSG00000060126 170.21 1768.52 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Eef1b2 ENSMUSG00000025967 165.85 1723.22 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
40. Chchd2 ENSMUSG00000070493 162.05 1683.74 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rps4x ENSMUSG00000031320 162.05 1683.74 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
42. Rps20 ENSMUSG00000028234 159.87 1661.09 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Hba-a1 ENSMUSG00000069919 156.07 1621.60 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
44. Ccnd2 ENSMUSG00000000184 153.35 1593.34 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
45. Hba-x ENSMUSG00000055609 152.80 1587.63 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
46. Gm13340 ENSMUSG00000083563 150.63 1565.08 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
47. Rpl4 ENSMUSG00000032399 150.63 1565.08 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
48. Vim ENSMUSG00000026728 150.63 1565.08 vimentin [Source:MGI Symbol;Acc:MGI:98932]
49. Hsp90aa1 ENSMUSG00000021270 149.54 1553.76 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Hbb-bh1 ENSMUSG00000052217 148.45 1542.43 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
51. Tubb2b ENSMUSG00000045136 147.37 1531.21 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
52. Atp5g3 ENSMUSG00000018770 145.19 1508.56 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Pabpc1 ENSMUSG00000022283 145.19 1508.56 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
54. Rpl32 ENSMUSG00000057841 143.56 1491.62 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
55. Pcbp1 ENSMUSG00000051695 143.02 1486.01 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
56. Hmgn1 ENSMUSG00000040681 135.95 1412.55 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
57. U2af2 ENSMUSG00000030435 134.32 1395.62 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
58. 2810417H13Rik 133.77 1389.90 RIKEN cDNA 2810417H13 gene
59. Anp32b ENSMUSG00000028333 132.14 1372.97 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
60. Marcksl1 ENSMUSG00000047945 132.14 1372.97 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
61. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 128.33 1333.38 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
62. Ubb ENSMUSG00000019505 127.79 1327.77 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
63. Hnrnpa2b1 ENSMUSG00000004980 126.16 1310.83 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
64. Rpl39-ps ENSMUSG00000036305 125.61 1305.12 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
65. Ywhae ENSMUSG00000020849 124.53 1293.90 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
66. Hnrnpc ENSMUSG00000060373 123.98 1288.18 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
67. Eef2 ENSMUSG00000034994 123.44 1282.57 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
68. Malat1 ENSMUSG00000092341 123.44 1282.57 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
69. Gm14303 ENSMUSG00000081344 122.35 1271.25 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
70. Rpl37 ENSMUSG00000041841 122.35 1271.25 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
71. Hnrnph1 ENSMUSG00000007850 118.55 1231.76 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
72. Banf1 ENSMUSG00000024844 111.48 1158.30 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
73. Paics ENSMUSG00000029247 110.39 1146.98 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
74. Serbp1 ENSMUSG00000036371 109.84 1141.26 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 107.13 1113.11 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Msi1 ENSMUSG00000054256 106.58 1107.39 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
77. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 106.58 1107.39 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
78. Marcks ENSMUSG00000069662 104.41 1084.84 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
79. Rps9 ENSMUSG00000006333 103.32 1073.52 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
80. Map1b ENSMUSG00000052727 101.69 1056.58 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
81. Son ENSMUSG00000022961 99.51 1033.93 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
82. Hnrnpa0 ENSMUSG00000007836 97.88 1017.00 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
83. Hmga2 ENSMUSG00000056758 97.34 1011.39 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
84. Rpl8 ENSMUSG00000003970 97.34 1011.39 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
85. Ywhaz ENSMUSG00000022285 94.62 983.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
86. H19 ENSMUSG00000000031 94.08 977.51 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
87. Tuba1a ENSMUSG00000072235 92.44 960.47 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
88. Gm14586 ENSMUSG00000083621 90.27 937.93 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Fscn1 ENSMUSG00000029581 89.18 926.60 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
90. Grb10 ENSMUSG00000020176 87.55 909.67 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
91. Rpl26 ENSMUSG00000060938 87.55 909.67 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
92. Txn1 ENSMUSG00000028367 87.01 904.05 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
93. Cox8a ENSMUSG00000035885 85.92 892.73 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
94. Crabp1 ENSMUSG00000032291 85.92 892.73 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
95. Rps5 ENSMUSG00000012848 85.37 887.01 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
96. Srsf3 ENSMUSG00000071172 85.37 887.01 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
97. Sf3b4 ENSMUSG00000068856 83.74 870.08 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
98. Ddx3x ENSMUSG00000000787 82.66 858.86 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
99. Nucks1 ENSMUSG00000026434 82.66 858.86 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
100. Gnb2l1 Gnb2l1 81.02 841.82
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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