Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s3.

Sample reads: 96,228. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Atp6 ENSMUSG00000064357 2823.59 29343.47 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
2. mt-Cytb ENSMUSG00000064370 2406.76 25011.67 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 2336.11 24277.45 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Co2 ENSMUSG00000064354 1997.00 20753.34 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. Ptma ENSMUSG00000026238 1975.81 20533.12 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd2 ENSMUSG00000064345 1488.33 15467.11 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
7. mt-Co1 ENSMUSG00000064351 1467.14 15246.90 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd1 ENSMUSG00000064341 1224.58 12726.15 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
9. mt-Nd4 ENSMUSG00000064363 979.66 10180.88 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
10. Mdk ENSMUSG00000027239 819.52 8516.66 midkine [Source:MGI Symbol;Acc:MGI:96949]
11. Eef1a1 ENSMUSG00000037742 744.17 7733.61 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. Tuba1b ENSMUSG00000023004 727.68 7562.24 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
13. mt-Nd3 ENSMUSG00000064360 673.52 6999.39 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. mt-Co3 ENSMUSG00000064358 628.77 6534.34 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. mt-Nd5 ENSMUSG00000064367 551.06 5726.76 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. Hbb-y ENSMUSG00000052187 546.35 5677.81 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. mt-Rnr1 ENSMUSG00000064337 438.02 4552.02 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
18. Pkm ENSMUSG00000032294 416.83 4331.80 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
19. Hbb-bh1 ENSMUSG00000052217 353.24 3670.96 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
20. Hsp90aa1 ENSMUSG00000021270 353.24 3670.96 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
21. Npm1 ENSMUSG00000057113 348.53 3622.01 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Rpl4 ENSMUSG00000032399 341.47 3548.64 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
23. Tubb5 ENSMUSG00000001525 336.76 3499.70 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Cfl1 ENSMUSG00000056201 313.21 3254.96 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Hba-x ENSMUSG00000055609 313.21 3254.96 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
26. Hsp90ab1 ENSMUSG00000023944 284.95 2961.27 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Nedd4 ENSMUSG00000032216 280.24 2912.33 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Rps20 ENSMUSG00000028234 268.46 2789.91 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
29. Tubb2b ENSMUSG00000045136 244.92 2545.27 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
30. Gm13340 ENSMUSG00000083563 235.50 2447.38 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
31. Ran ENSMUSG00000029430 235.50 2447.38 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
32. Tpt1 ENSMUSG00000060126 230.79 2398.43 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Eef1b2 ENSMUSG00000025967 226.08 2349.48 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
34. Rrm2 ENSMUSG00000020649 216.66 2251.59 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
35. Paics ENSMUSG00000029247 211.95 2202.64 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
36. Rpl41 ENSMUSG00000093674 211.95 2202.64 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
37. Rpl18a ENSMUSG00000045128 209.59 2178.11 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Rpl23 ENSMUSG00000071415 209.59 2178.11 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Rpl13a ENSMUSG00000074129 202.53 2104.74 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
40. Pabpc1 ENSMUSG00000022283 186.04 1933.38 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
41. Rps9 ENSMUSG00000006333 181.33 1884.43 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
42. Rpl32 ENSMUSG00000057841 176.62 1835.48 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
43. Rps4x ENSMUSG00000031320 176.62 1835.48 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
44. Crabp1 ENSMUSG00000032291 162.49 1688.64 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
45. Rpl37 ENSMUSG00000041841 160.14 1664.22 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
46. Ldha ENSMUSG00000063229 157.78 1639.69 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
47. Chchd2 ENSMUSG00000070493 153.07 1590.74 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Vim ENSMUSG00000026728 150.72 1566.32 vimentin [Source:MGI Symbol;Acc:MGI:98932]
49. Hnrnpa2b1 ENSMUSG00000004980 146.01 1517.37 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
50. Morf4l1 ENSMUSG00000062270 146.01 1517.37 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
51. Tmsb4x ENSMUSG00000049775 146.01 1517.37 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
52. Ubb ENSMUSG00000019505 146.01 1517.37 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
53. Map1b ENSMUSG00000052727 141.30 1468.43 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
54. Banf1 ENSMUSG00000024844 138.94 1443.90 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Eif4g2 ENSMUSG00000005610 138.94 1443.90 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
56. Atp5g3 ENSMUSG00000018770 136.59 1419.48 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
57. Hmgn1 ENSMUSG00000040681 131.88 1370.53 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
58. Hnrnpa0 ENSMUSG00000007836 131.88 1370.53 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
59. Hnrnpc ENSMUSG00000060373 129.52 1346.01 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Ybx1 ENSMUSG00000028639 129.52 1346.01 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
61. Slc25a5 ENSMUSG00000016319 127.17 1321.58 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
62. Gm10073 ENSMUSG00000060019 124.81 1297.06 predicted pseudogene 10073 [Source:MGI Symbol;Acc:MGI:3641908]
63. Ywhae ENSMUSG00000020849 122.46 1272.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
64. Kpnb1 ENSMUSG00000001440 115.39 1199.16 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
65. Ndufa12 ENSMUSG00000020022 115.39 1199.16 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
66. Rps26 ENSMUSG00000025362 115.39 1199.16 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
67. Rpl22 ENSMUSG00000028936 113.04 1174.74 ribosomal protein L22 [Source:MGI Symbol;Acc:MGI:99262]
68. Scd2 ENSMUSG00000025203 113.04 1174.74 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
69. U2af2 ENSMUSG00000030435 113.04 1174.74 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
70. Zic1 ENSMUSG00000032368 113.04 1174.74 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
71. Ccnd2 ENSMUSG00000000184 108.33 1125.79 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
72. Hnrnpk ENSMUSG00000021546 108.33 1125.79 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
73. Rpl34 ENSMUSG00000062006 108.33 1125.79 ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:1915686]
74. Srsf3 ENSMUSG00000071172 108.33 1125.79 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
75. Tmpo ENSMUSG00000019961 108.33 1125.79 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
76. Top1 ENSMUSG00000070544 108.33 1125.79 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
77. Ddx5 ENSMUSG00000020719 105.97 1101.27 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
78. Gm14586 ENSMUSG00000083621 105.97 1101.27 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
79. Gm8292 ENSMUSG00000100215 105.97 1101.27 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
80. Hnrnpdl ENSMUSG00000029328 105.97 1101.27 heterogeneous nuclear ribonucleoprotein D-like [Source:MGI Symbol;Acc:MGI:1355299]
81. Plagl1 ENSMUSG00000019817 105.97 1101.27 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
82. Rpl26 ENSMUSG00000060938 105.97 1101.27 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
83. Rpl39-ps ENSMUSG00000036305 105.97 1101.27 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
84. Rps5 ENSMUSG00000012848 105.97 1101.27 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
85. Gm14303 ENSMUSG00000081344 101.26 1052.32 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
86. Hmga2 ENSMUSG00000056758 98.91 1027.90 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
87. Grb10 ENSMUSG00000020176 96.55 1003.37 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
88. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 96.55 1003.37 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
89. Marcks ENSMUSG00000069662 96.55 1003.37 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
90. Sfpq ENSMUSG00000028820 96.55 1003.37 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
91. Gm5963 ENSMUSG00000052192 94.20 978.95 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
92. H19 ENSMUSG00000000031 94.20 978.95 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
93. Hba-a1 ENSMUSG00000069919 94.20 978.95 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
94. Ndufc2 ENSMUSG00000030647 94.20 978.95 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
95. Nucks1 ENSMUSG00000026434 94.20 978.95 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
96. Dek ENSMUSG00000021377 91.84 954.42 DEK oncogene (DNA binding) [Source:MGI Symbol;Acc:MGI:1926209]
97. Hba-a2 ENSMUSG00000069917 91.84 954.42 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
98. Psip1 ENSMUSG00000028484 91.84 954.42 PC4 and SFRS1 interacting protein 1 [Source:MGI Symbol;Acc:MGI:2142116]
99. Rps3a1 ENSMUSG00000028081 91.84 954.42 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
100. Ywhaz ENSMUSG00000022285 91.84 954.42 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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