Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s18.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7017.49 72910.00 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2922.92 30368.42 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2576.70 26771.28 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. Ptma ENSMUSG00000026238 1744.70 18127.01 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd5 ENSMUSG00000064367 1527.74 15872.84 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
6. mt-Rnr1 ENSMUSG00000064337 1500.57 15590.55 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
7. mt-Nd2 ENSMUSG00000064345 1429.35 14850.60 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
8. mt-Nd1 ENSMUSG00000064341 1399.71 14542.64 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
9. mt-Co2 ENSMUSG00000064354 1347.43 13999.47 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
10. mt-Co1 ENSMUSG00000064351 1212.81 12600.80 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 1060.49 11018.23 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 762.84 7925.72 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Eef1a1 ENSMUSG00000037742 603.52 6270.42 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Nd3 ENSMUSG00000064360 539.30 5603.19 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Igf2 ENSMUSG00000048583 443.79 4610.87 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. mt-Co3 ENSMUSG00000064358 413.74 4298.66 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. H19 ENSMUSG00000000031 378.75 3935.12 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Rpsa ENSMUSG00000032518 333.05 3460.31 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. Npm1 ENSMUSG00000057113 322.76 3353.40 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Hsp90ab1 ENSMUSG00000023944 288.59 2998.38 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
21. Mdk ENSMUSG00000027239 283.24 2942.79 midkine [Source:MGI Symbol;Acc:MGI:96949]
22. Ybx1 ENSMUSG00000028639 271.71 2823.00 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
23. Hbb-y ENSMUSG00000052187 268.41 2788.71 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
24. Gm26917 ENSMUSG00000097971 254.01 2639.10 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
25. Malat1 ENSMUSG00000092341 251.95 2617.70 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
26. Nedd4 ENSMUSG00000032216 226.84 2356.81 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Cfl1 ENSMUSG00000056201 212.43 2207.10 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Tmsb4x ENSMUSG00000049775 200.08 2078.78 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
29. Hmga2 ENSMUSG00000056758 195.96 2035.98 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
30. Gm13340 ENSMUSG00000083563 194.72 2023.09 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
31. Set ENSMUSG00000054766 192.25 1997.43 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
32. Gm26924 Gm26924 177.85 1847.82
33. Gm10800 ENSMUSG00000075014 174.96 1817.79 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
34. Tuba1b ENSMUSG00000023004 174.55 1813.53 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
35. Eif5a ENSMUSG00000078812 172.08 1787.87 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Tubb5 ENSMUSG00000001525 169.61 1762.21 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Rpl23 ENSMUSG00000071415 165.91 1723.76 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
38. Gm17132 ENSMUSG00000061331 164.67 1710.88 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
39. Pkm ENSMUSG00000032294 164.26 1706.62 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
40. Chchd2 ENSMUSG00000070493 160.14 1663.82 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Eif4g2 ENSMUSG00000005610 158.91 1651.04 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. Rpl4 ENSMUSG00000032399 155.61 1616.75 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Tpt1 ENSMUSG00000060126 155.61 1616.75 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
44. Pabpc1 ENSMUSG00000022283 154.38 1603.97 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
45. Ran ENSMUSG00000029430 147.79 1535.50 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
46. Atp5g3 ENSMUSG00000018770 145.73 1514.10 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Rps3a1 ENSMUSG00000028081 143.68 1492.80 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
48. Hsp90aa1 ENSMUSG00000021270 139.15 1445.73 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Pcbp1 ENSMUSG00000051695 136.27 1415.81 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
50. Eef1b2 ENSMUSG00000025967 133.80 1390.15 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Rpl32 ENSMUSG00000057841 130.50 1355.86 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
52. Rps20 ENSMUSG00000028234 128.03 1330.20 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Ubb ENSMUSG00000019505 125.15 1300.28 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
54. Peg3 ENSMUSG00000002265 121.03 1257.47 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
55. Son ENSMUSG00000022961 120.21 1248.95 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
56. Tuba1a ENSMUSG00000072235 119.39 1240.43 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
57. Rps4x ENSMUSG00000031320 118.98 1236.17 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
58. Anp32b ENSMUSG00000028333 118.15 1227.55 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
59. 2810417H13Rik 117.33 1219.03 RIKEN cDNA 2810417H13 gene
60. Hnrnpc ENSMUSG00000060373 109.51 1137.78 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
61. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 107.45 1116.38 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
62. Hmgn1 ENSMUSG00000040681 107.04 1112.12 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
63. Ldha ENSMUSG00000063229 107.04 1112.12 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
64. Rplp1 ENSMUSG00000007892 105.80 1099.24 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
65. Rps26 ENSMUSG00000025362 101.27 1052.17 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
66. Ccnd2 ENSMUSG00000000184 100.86 1047.91 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
67. Map1b ENSMUSG00000052727 97.16 1009.47 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
68. Marcks ENSMUSG00000069662 96.74 1005.10 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
69. Rps9 ENSMUSG00000006333 93.86 975.18 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
70. Serbp1 ENSMUSG00000036371 93.45 970.92 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
71. Banf1 ENSMUSG00000024844 92.63 962.40 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
72. Hbb-bh1 ENSMUSG00000052217 90.57 941.00 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
73. Pbx1 ENSMUSG00000052534 90.57 941.00 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
74. Ywhab ENSMUSG00000018326 89.33 928.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
75. Hnrnpa2b1 ENSMUSG00000004980 88.92 923.86 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
76. Calm1 ENSMUSG00000001175 87.69 911.08 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
77. Marcksl1 ENSMUSG00000047945 87.69 911.08 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
78. Cdkn1c ENSMUSG00000037664 87.28 906.82 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
79. U2af2 ENSMUSG00000030435 87.28 906.82 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
80. Hba-x ENSMUSG00000055609 86.86 902.45 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
81. Vim ENSMUSG00000026728 86.86 902.45 vimentin [Source:MGI Symbol;Acc:MGI:98932]
82. Eef2 ENSMUSG00000034994 85.63 889.67 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
83. Ywhae ENSMUSG00000020849 85.63 889.67 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. Paics ENSMUSG00000029247 84.81 881.16 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
85. Hba-a1 ENSMUSG00000069919 83.57 868.27 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
86. Rps5 ENSMUSG00000012848 82.34 855.49 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
87. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 81.92 851.13 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
88. H3f3b ENSMUSG00000016559 81.51 846.87 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
89. Gm21897 ENSMUSG00000094472 80.69 838.35 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
90. Top1 ENSMUSG00000070544 79.45 825.47 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
91. Fkbp1a ENSMUSG00000032966 78.22 812.69 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
92. Rpl37 ENSMUSG00000041841 77.81 808.43 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
93. Srsf3 ENSMUSG00000071172 77.40 804.17 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
94. Fscn1 ENSMUSG00000029581 76.57 795.54 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
95. Gm14586 ENSMUSG00000083621 74.51 774.14 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
96. Rpl26 ENSMUSG00000060938 74.51 774.14 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
97. Gnb2l1 Gnb2l1 74.10 769.88
98. Grb10 ENSMUSG00000020176 74.10 769.88 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
99. Ddx3x ENSMUSG00000000787 73.28 761.36 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
100. Sfpq ENSMUSG00000028820 73.28 761.36 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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