Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s17.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5968.53 62007.15 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2953.58 30684.79 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2609.33 27108.37 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. Ptma ENSMUSG00000026238 2080.36 21612.89 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 1600.48 16627.41 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1568.18 16291.84 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1327.27 13789.03 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd2 ENSMUSG00000064345 1269.79 13191.87 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Rnr1 ENSMUSG00000064337 1152.24 11970.64 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
10. mt-Nd4 ENSMUSG00000064363 997.88 10366.99 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 894.54 9293.39 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Actb ENSMUSG00000029580 727.90 7562.16 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Eef1a1 ENSMUSG00000037742 652.33 6777.07 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Nd3 ENSMUSG00000064360 620.04 6441.60 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. mt-Co3 ENSMUSG00000064358 437.26 4542.70 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Rpsa ENSMUSG00000032518 403.67 4193.73 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
17. H19 ENSMUSG00000000031 341.67 3549.61 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Npm1 ENSMUSG00000057113 329.40 3422.14 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
19. Hbb-y ENSMUSG00000052187 308.08 3200.65 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Igf2 ENSMUSG00000048583 308.08 3200.65 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Hsp90ab1 ENSMUSG00000023944 279.02 2898.74 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
22. Tmsb4x ENSMUSG00000049775 269.98 2804.83 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
23. Nedd4 ENSMUSG00000032216 259.00 2690.75 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Mdk ENSMUSG00000027239 256.41 2663.85 midkine [Source:MGI Symbol;Acc:MGI:96949]
25. Ybx1 ENSMUSG00000028639 235.74 2449.11 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
26. Set ENSMUSG00000054766 224.76 2335.03 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
27. Malat1 ENSMUSG00000092341 222.18 2308.23 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
28. Rpl23 ENSMUSG00000071415 213.14 2214.31 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
29. Gm13340 ENSMUSG00000083563 206.68 2147.20 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
30. Pkm ENSMUSG00000032294 187.95 1952.62 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Cfl1 ENSMUSG00000056201 186.66 1939.21 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Eif4g2 ENSMUSG00000005610 184.72 1919.06 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Hsp90aa1 ENSMUSG00000021270 177.62 1845.30 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
34. Tubb5 ENSMUSG00000001525 173.09 1798.23 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Gm10800 ENSMUSG00000075014 172.45 1791.59 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
36. Chchd2 ENSMUSG00000070493 165.34 1717.72 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Tpt1 ENSMUSG00000060126 163.41 1697.67 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Tuba1b ENSMUSG00000023004 163.41 1697.67 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
39. Hmga2 ENSMUSG00000056758 155.66 1617.15 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
40. Eif5a ENSMUSG00000078812 154.36 1603.65 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Rpl4 ENSMUSG00000032399 147.26 1529.89 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Rps20 ENSMUSG00000028234 145.32 1509.73 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Ran ENSMUSG00000029430 144.68 1503.08 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
44. Rplp1 ENSMUSG00000007892 143.38 1489.58 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
45. Rps3a1 ENSMUSG00000028081 142.09 1476.18 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
46. Pabpc1 ENSMUSG00000022283 135.63 1409.06 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
47. Tuba1a ENSMUSG00000072235 134.99 1402.41 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
48. Ubb ENSMUSG00000019505 131.76 1368.86 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
49. Atp5g3 ENSMUSG00000018770 129.17 1341.95 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Hnrnpc ENSMUSG00000060373 129.17 1341.95 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
51. Pcbp1 ENSMUSG00000051695 125.95 1308.50 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
52. Rpl32 ENSMUSG00000057841 125.30 1301.74 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
53. Son ENSMUSG00000022961 122.07 1268.19 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
54. 2810417H13Rik 118.20 1227.98 RIKEN cDNA 2810417H13 gene
55. Rps4x ENSMUSG00000031320 118.20 1227.98 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Eef1b2 ENSMUSG00000025967 114.97 1194.43 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
57. Map1b ENSMUSG00000052727 114.97 1194.43 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
58. Rps26 ENSMUSG00000025362 114.32 1187.67 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
59. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 113.03 1174.27 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
60. Cdkn1c ENSMUSG00000037664 108.51 1127.31 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
61. Ccnd2 ENSMUSG00000000184 107.86 1120.56 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
62. Hmgn1 ENSMUSG00000040681 107.86 1120.56 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
63. Banf1 ENSMUSG00000024844 107.22 1113.91 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
64. Hba-x ENSMUSG00000055609 105.92 1100.40 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
65. Marcks ENSMUSG00000069662 105.92 1100.40 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
66. Pbx1 ENSMUSG00000052534 105.92 1100.40 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
67. Ldha ENSMUSG00000063229 103.34 1073.60 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
68. Peg3 ENSMUSG00000002265 100.76 1046.80 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
69. Rpl39-ps ENSMUSG00000036305 100.76 1046.80 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
70. Grb10 ENSMUSG00000020176 99.46 1033.29 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
71. Hnrnpa2b1 ENSMUSG00000004980 99.46 1033.29 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
72. Gm26924 Gm26924 98.82 1026.64
73. H3f3b ENSMUSG00000016559 98.82 1026.64 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
74. Ywhab ENSMUSG00000018326 98.82 1026.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
75. Gm17132 ENSMUSG00000061331 97.53 1013.24 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
76. Top1 ENSMUSG00000070544 97.53 1013.24 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
77. Marcksl1 ENSMUSG00000047945 96.88 1006.49 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
78. Hbb-bh1 ENSMUSG00000052217 93.65 972.93 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
79. Serbp1 ENSMUSG00000036371 93.65 972.93 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
80. Gm14303 ENSMUSG00000081344 91.71 952.78 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
81. Vim ENSMUSG00000026728 91.71 952.78 vimentin [Source:MGI Symbol;Acc:MGI:98932]
82. Tubb2b ENSMUSG00000045136 91.07 946.13 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
83. Nucks1 ENSMUSG00000026434 90.42 939.37 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
84. Rpl37 ENSMUSG00000041841 90.42 939.37 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
85. Rps5 ENSMUSG00000012848 89.78 932.73 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
86. Ddx5 ENSMUSG00000020719 89.13 925.97 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
87. Eef2 ENSMUSG00000034994 88.48 919.22 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
88. Hnrnph1 ENSMUSG00000007850 87.84 912.57 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
89. Anp32b ENSMUSG00000028333 87.19 905.82 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
90. Rrm2 ENSMUSG00000020649 86.55 899.17 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
91. Rpl18a ENSMUSG00000045128 84.61 879.01 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
92. U2af2 ENSMUSG00000030435 84.61 879.01 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
93. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 83.96 872.26 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
94. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 83.32 865.61 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
95. Paics ENSMUSG00000029247 82.67 858.86 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
96. Ddx3x ENSMUSG00000000787 82.03 852.21 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
97. Rpl13a ENSMUSG00000074129 81.38 845.46 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
98. Sfpq ENSMUSG00000028820 81.38 845.46 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
99. Gm26917 ENSMUSG00000097971 79.44 825.30 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
100. Morf4l1 ENSMUSG00000062270 79.44 825.30 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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