Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s15.

Sample reads: 96,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7225.46 75081.49 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2672.10 27766.43 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2085.76 21673.63 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Rnr1 ENSMUSG00000064337 2028.41 21077.69 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
5. Ptma ENSMUSG00000026238 1928.05 20034.83 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Co2 ENSMUSG00000064354 1649.59 17141.28 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1426.98 14828.09 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Co1 ENSMUSG00000064351 1180.22 12263.95 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 874.60 9088.18 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd4 ENSMUSG00000064363 820.27 8523.62 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 803.67 8351.13 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Actb ENSMUSG00000029580 742.54 7715.91 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 630.86 6555.42 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Eef1a1 ENSMUSG00000037742 611.24 6351.54 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Rpsa ENSMUSG00000032518 392.40 4077.52 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Igf2 ENSMUSG00000048583 337.31 3505.07 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Tmsb4x ENSMUSG00000049775 325.99 3387.44 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
18. mt-Co3 ENSMUSG00000064358 310.15 3222.84 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Npm1 ENSMUSG00000057113 277.70 2885.65 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. H19 ENSMUSG00000000031 275.44 2862.16 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
21. Set ENSMUSG00000054766 267.13 2775.81 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
22. Ybx1 ENSMUSG00000028639 263.36 2736.64 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
23. Mdk ENSMUSG00000027239 256.57 2666.08 midkine [Source:MGI Symbol;Acc:MGI:96949]
24. Hsp90ab1 ENSMUSG00000023944 239.97 2493.59 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
25. Malat1 ENSMUSG00000092341 236.20 2454.41 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
26. Nedd4 ENSMUSG00000032216 236.20 2454.41 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Gm10800 ENSMUSG00000075014 223.37 2321.09 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
28. Cfl1 ENSMUSG00000056201 213.56 2219.15 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Eif4g2 ENSMUSG00000005610 188.65 1960.31 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Eif5a ENSMUSG00000078812 184.13 1913.34 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
31. Pkm ENSMUSG00000032294 178.09 1850.58 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Tuba1a ENSMUSG00000072235 176.58 1834.89 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
33. Rpl23 ENSMUSG00000071415 174.32 1811.40 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
34. Hmga2 ENSMUSG00000056758 169.03 1756.43 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
35. Gm13340 ENSMUSG00000083563 168.28 1748.64 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
36. Tpt1 ENSMUSG00000060126 168.28 1748.64 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Tubb5 ENSMUSG00000001525 167.53 1740.84 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
38. Map1b ENSMUSG00000052727 164.51 1709.46 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
39. Hbb-y ENSMUSG00000052187 160.73 1670.18 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
40. Rps20 ENSMUSG00000028234 153.94 1599.63 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Tuba1b ENSMUSG00000023004 152.43 1583.94 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
42. Hnrnpc ENSMUSG00000060373 148.66 1544.76 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Rps3a1 ENSMUSG00000028081 144.13 1497.69 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
44. Atp5g3 ENSMUSG00000018770 139.60 1450.62 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Chchd2 ENSMUSG00000070493 138.85 1442.82 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Pabpc1 ENSMUSG00000022283 137.34 1427.13 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
47. Hsp90aa1 ENSMUSG00000021270 136.59 1419.34 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
48. Rplp1 ENSMUSG00000007892 136.59 1419.34 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
49. Ran ENSMUSG00000029430 135.08 1403.65 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
50. Pcbp1 ENSMUSG00000051695 128.28 1332.99 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
51. Rpl39-ps ENSMUSG00000036305 128.28 1332.99 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
52. Pbx1 ENSMUSG00000052534 125.27 1301.71 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
53. Ubb ENSMUSG00000019505 123.00 1278.12 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
54. Eef1b2 ENSMUSG00000025967 121.49 1262.43 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Rps4x ENSMUSG00000031320 121.49 1262.43 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Tubb2b ENSMUSG00000045136 120.74 1254.64 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
57. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 119.23 1238.95 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
58. Rps26 ENSMUSG00000025362 117.72 1223.26 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
59. Son ENSMUSG00000022961 112.44 1168.39 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
60. Hmgn1 ENSMUSG00000040681 111.68 1160.49 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
61. Grb10 ENSMUSG00000020176 110.17 1144.80 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
62. Ldha ENSMUSG00000063229 107.91 1121.32 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
63. Gm17132 ENSMUSG00000061331 107.16 1113.53 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
64. Hnrnpa2b1 ENSMUSG00000004980 106.40 1105.63 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
65. Marcks ENSMUSG00000069662 104.89 1089.94 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
66. Rpl32 ENSMUSG00000057841 104.14 1082.14 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
67. Ccnd2 ENSMUSG00000000184 103.38 1074.25 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
68. Rpl4 ENSMUSG00000032399 102.63 1066.45 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
69. Marcksl1 ENSMUSG00000047945 101.12 1050.76 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
70. Trp53i11 ENSMUSG00000068735 99.61 1035.07 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
71. Ywhab ENSMUSG00000018326 98.85 1027.17 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
72. Hnrnph1 ENSMUSG00000007850 97.35 1011.59 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
73. Calm1 ENSMUSG00000001175 96.59 1003.69 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
74. Top1 ENSMUSG00000070544 95.84 995.90 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
75. Rrm2 ENSMUSG00000020649 95.08 988.00 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
76. Serbp1 ENSMUSG00000036371 95.08 988.00 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
77. Fkbp1a ENSMUSG00000032966 94.33 980.21 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
78. Cdkn1c ENSMUSG00000037664 92.06 956.62 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
79. Vim ENSMUSG00000026728 91.31 948.82 vimentin [Source:MGI Symbol;Acc:MGI:98932]
80. H3f3b ENSMUSG00000016559 88.29 917.44 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
81. U2af2 ENSMUSG00000030435 88.29 917.44 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
82. Rps9 ENSMUSG00000006333 87.54 909.65 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
83. Ywhae ENSMUSG00000020849 86.03 893.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
84. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 84.52 878.27 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
85. Gm14303 ENSMUSG00000081344 83.76 870.37 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
86. Nucks1 ENSMUSG00000026434 83.76 870.37 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
87. Ywhaz ENSMUSG00000022285 83.01 862.58 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
88. 2810417H13Rik 81.50 846.89 RIKEN cDNA 2810417H13 gene
89. Ddx3x ENSMUSG00000000787 81.50 846.89 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
90. Gm14586 ENSMUSG00000083621 81.50 846.89 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
91. Eef2 ENSMUSG00000034994 80.74 838.99 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
92. Rps5 ENSMUSG00000012848 79.23 823.30 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
93. Srsf3 ENSMUSG00000071172 79.23 823.30 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
94. Basp1 ENSMUSG00000045763 77.73 807.71 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
95. Hoxc8 ENSMUSG00000001657 77.73 807.71 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
96. Rpl37 ENSMUSG00000041841 77.73 807.71 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
97. Banf1 ENSMUSG00000024844 76.97 799.81 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
98. Ina ENSMUSG00000034336 76.97 799.81 internexin neuronal intermediate filament protein, alpha [Source:MGI Symbol;Acc:MGI:96568]
99. Anp32b ENSMUSG00000028333 76.22 792.02 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
100. Rpl13a ENSMUSG00000074129 76.22 792.02 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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