Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s14.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 7321.42 76063.03 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2743.89 28506.57 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2180.09 22649.19 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. Ptma ENSMUSG00000026238 2032.02 21110.88 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd5 ENSMUSG00000064367 1695.79 17617.75 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
6. mt-Rnr1 ENSMUSG00000064337 1639.62 17034.19 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
7. mt-Co2 ENSMUSG00000064354 1498.86 15571.82 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1471.87 15291.42 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd1 ENSMUSG00000064341 1306.30 13571.29 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
10. mt-Co1 ENSMUSG00000064351 1130.52 11745.09 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 997.78 10366.04 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 763.65 7933.64 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd3 ENSMUSG00000064360 561.61 5834.63 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Eef1a1 ENSMUSG00000037742 556.51 5781.64 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Rpsa ENSMUSG00000032518 362.50 3766.05 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. mt-Co3 ENSMUSG00000064358 329.68 3425.08 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Npm1 ENSMUSG00000057113 320.19 3326.49 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. Mdk ENSMUSG00000027239 315.09 3273.50 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. H19 ENSMUSG00000000031 287.37 2985.52 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
20. Tmsb4x ENSMUSG00000049775 283.72 2947.60 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
21. Hsp90ab1 ENSMUSG00000023944 272.05 2826.36 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
22. Nedd4 ENSMUSG00000032216 268.41 2788.54 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Igf2 ENSMUSG00000048583 266.22 2765.79 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
24. Cfl1 ENSMUSG00000056201 253.82 2636.96 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Ybx1 ENSMUSG00000028639 239.23 2485.39 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
26. Pkm ENSMUSG00000032294 226.83 2356.56 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Tuba1a ENSMUSG00000072235 210.06 2182.34 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
28. Tubb5 ENSMUSG00000001525 194.74 2023.17 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Hbb-y ENSMUSG00000052187 191.09 1985.25 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
30. Eif5a ENSMUSG00000078812 186.72 1939.85 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
31. Tpt1 ENSMUSG00000060126 170.67 1773.11 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Rpl23 ENSMUSG00000071415 163.38 1697.37 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Chchd2 ENSMUSG00000070493 161.19 1674.62 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Gm13340 ENSMUSG00000083563 160.46 1667.04 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
35. Tuba1b ENSMUSG00000023004 160.46 1667.04 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
36. Set ENSMUSG00000054766 159.73 1659.45 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
37. Map1b ENSMUSG00000052727 159.00 1651.87 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
38. Eif4g2 ENSMUSG00000005610 152.44 1583.72 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Atp5g3 ENSMUSG00000018770 149.52 1553.38 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
40. Pcbp1 ENSMUSG00000051695 146.60 1523.04 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
41. Ran ENSMUSG00000029430 146.60 1523.04 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
42. Pabpc1 ENSMUSG00000022283 144.42 1500.40 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
43. Eef1b2 ENSMUSG00000025967 141.50 1470.06 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Rplp1 ENSMUSG00000007892 141.50 1470.06 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
45. Rpl39-ps ENSMUSG00000036305 140.04 1454.89 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
46. Marcksl1 ENSMUSG00000047945 137.85 1432.14 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
47. Rpl4 ENSMUSG00000032399 134.93 1401.80 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
48. Hnrnpc ENSMUSG00000060373 134.20 1394.22 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
49. Rps3a1 ENSMUSG00000028081 132.02 1371.57 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
50. Malat1 ENSMUSG00000092341 131.29 1363.99 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
51. Rps4x ENSMUSG00000031320 130.56 1356.40 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
52. Rps26 ENSMUSG00000025362 129.83 1348.82 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
53. Hsp90aa1 ENSMUSG00000021270 129.10 1341.23 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
54. Rps20 ENSMUSG00000028234 129.10 1341.23 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
55. Hmga2 ENSMUSG00000056758 126.18 1310.90 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
56. Ubb ENSMUSG00000019505 123.99 1288.15 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
57. Rps9 ENSMUSG00000006333 123.26 1280.56 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
58. Son ENSMUSG00000022961 121.80 1265.39 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
59. Hmgn1 ENSMUSG00000040681 116.70 1212.41 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
60. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 115.97 1204.82 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
61. Grb10 ENSMUSG00000020176 108.68 1129.09 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
62. Ccnd2 ENSMUSG00000000184 105.76 1098.75 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
63. Ldha ENSMUSG00000063229 105.03 1091.17 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
64. Rpl32 ENSMUSG00000057841 101.38 1053.25 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
65. Rpl37 ENSMUSG00000041841 101.38 1053.25 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
66. Cdkn1c ENSMUSG00000037664 99.19 1030.50 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
67. Anp32b ENSMUSG00000028333 97.01 1007.85 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
68. Fkbp1a ENSMUSG00000032966 97.01 1007.85 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
69. Hnrnpa2b1 ENSMUSG00000004980 96.28 1000.26 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
70. Eef2 ENSMUSG00000034994 94.82 985.10 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
71. Calm1 ENSMUSG00000001175 94.09 977.51 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
72. Marcks ENSMUSG00000069662 94.09 977.51 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
73. Tubb2b ENSMUSG00000045136 94.09 977.51 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
74. Ywhab ENSMUSG00000018326 93.36 969.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
75. Ywhae ENSMUSG00000020849 93.36 969.93 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
76. H3f3b ENSMUSG00000016559 92.63 962.34 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
77. Serbp1 ENSMUSG00000036371 90.44 939.59 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
78. Rps5 ENSMUSG00000012848 89.71 932.01 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
79. U2af2 ENSMUSG00000030435 88.25 916.84 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
80. Vim ENSMUSG00000026728 88.25 916.84 vimentin [Source:MGI Symbol;Acc:MGI:98932]
81. Crabp1 ENSMUSG00000032291 87.52 909.25 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
82. Ywhaz ENSMUSG00000022285 87.52 909.25 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
83. 2810417H13Rik 86.07 894.19 RIKEN cDNA 2810417H13 gene
84. Banf1 ENSMUSG00000024844 85.34 886.61 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
85. Basp1 ENSMUSG00000045763 85.34 886.61 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
86. Gm14586 ENSMUSG00000083621 85.34 886.61 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
87. Hnrnph1 ENSMUSG00000007850 85.34 886.61 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
88. Paics ENSMUSG00000029247 84.61 879.02 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
89. Cox8a ENSMUSG00000035885 83.88 871.44 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
90. Rpl13a ENSMUSG00000074129 83.88 871.44 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
91. Rpl18a ENSMUSG00000045128 83.88 871.44 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
92. Oaz1 ENSMUSG00000035242 83.15 863.85 ornithine decarboxylase antizyme 1 [Source:MGI Symbol;Acc:MGI:109433]
93. Gm10800 ENSMUSG00000075014 82.42 856.27 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
94. Rpl8 ENSMUSG00000003970 82.42 856.27 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
95. Trp53i11 ENSMUSG00000068735 81.69 848.69 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
96. Hnrnpa0 ENSMUSG00000007836 80.96 841.10 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
97. Gnb2l1 Gnb2l1 80.23 833.52
98. Pbx1 ENSMUSG00000052534 78.04 810.77 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
99. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 78.04 810.77 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
100. Tmsb10 ENSMUSG00000079523 77.31 803.18 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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