Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s13.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Atp6 ENSMUSG00000064357 3337.49 34677.16 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
2. mt-Rnr2 ENSMUSG00000064339 3178.03 33020.34 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Co2 ENSMUSG00000064354 2281.52 23705.43 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Cytb ENSMUSG00000064370 2170.06 22547.34 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. Ptma ENSMUSG00000026238 2070.33 21511.12 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 1555.68 16163.81 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Rnr1 ENSMUSG00000064337 1207.43 12545.43 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
8. mt-Nd3 ENSMUSG00000064360 1158.36 12035.58 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Nd2 ENSMUSG00000064345 1150.90 11958.07 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1137.03 11813.96 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 971.17 10090.64 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 746.64 7757.73 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Eef1a1 ENSMUSG00000037742 745.58 7746.72 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Nd5 ENSMUSG00000064367 677.31 7037.38 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. Rpsa ENSMUSG00000032518 452.25 4698.96 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. H19 ENSMUSG00000000031 374.92 3895.49 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. mt-Co3 ENSMUSG00000064358 372.25 3867.75 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Hbb-y ENSMUSG00000052187 356.79 3707.12 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Cfl1 ENSMUSG00000056201 336.52 3496.51 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
20. Tmsb4x ENSMUSG00000049775 322.12 3346.89 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
21. Npm1 ENSMUSG00000057113 299.72 3114.15 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Pkm ENSMUSG00000032294 289.59 3008.90 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
23. Mdk ENSMUSG00000027239 282.12 2931.28 midkine [Source:MGI Symbol;Acc:MGI:96949]
24. Nedd4 ENSMUSG00000032216 250.66 2604.41 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Igf2 ENSMUSG00000048583 241.59 2510.17 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
26. Eif5a ENSMUSG00000078812 223.46 2321.79 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
27. Tubb5 ENSMUSG00000001525 220.79 2294.05 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Hsp90ab1 ENSMUSG00000023944 209.06 2172.17 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Tubb2b ENSMUSG00000045136 206.93 2150.04 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
30. Tuba1a ENSMUSG00000072235 206.39 2144.43 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
31. Tpt1 ENSMUSG00000060126 200.53 2083.54 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Tuba1b ENSMUSG00000023004 200.53 2083.54 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
33. Eif4g2 ENSMUSG00000005610 196.26 2039.18 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Ybx1 ENSMUSG00000028639 196.26 2039.18 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
35. Rpl39-ps ENSMUSG00000036305 195.19 2028.06 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
36. Rps26 ENSMUSG00000025362 190.39 1978.19 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
37. Gm10800 ENSMUSG00000075014 189.33 1967.17 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
38. Rps20 ENSMUSG00000028234 187.73 1950.55 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Rpl23 ENSMUSG00000071415 185.59 1928.32 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Rplp1 ENSMUSG00000007892 180.26 1872.94 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
41. Rpl4 ENSMUSG00000032399 171.19 1778.70 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Ran ENSMUSG00000029430 167.46 1739.94 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
43. Eef1b2 ENSMUSG00000025967 166.39 1728.82 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Chchd2 ENSMUSG00000070493 164.79 1712.20 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. Gm13340 ENSMUSG00000083563 164.26 1706.69 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
46. Rps4x ENSMUSG00000031320 164.26 1706.69 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Rps3a1 ENSMUSG00000028081 157.33 1634.69 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
48. Atp5g3 ENSMUSG00000018770 154.66 1606.95 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Ubb ENSMUSG00000019505 153.06 1590.32 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
50. Hsp90aa1 ENSMUSG00000021270 151.46 1573.70 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Hnrnpc ENSMUSG00000060373 139.73 1451.82 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
52. Rpl37 ENSMUSG00000041841 133.86 1390.83 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
53. Pcbp1 ENSMUSG00000051695 131.73 1368.70 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
54. Rpl18a ENSMUSG00000045128 131.73 1368.70 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
55. Rpl32 ENSMUSG00000057841 131.73 1368.70 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
56. Eef2 ENSMUSG00000034994 130.66 1357.58 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
57. Ldha ENSMUSG00000063229 128.53 1335.45 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
58. Tmsb10 ENSMUSG00000079523 127.46 1324.33 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
59. Map1b ENSMUSG00000052727 125.33 1302.20 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
60. Hba-a1 ENSMUSG00000069919 120.00 1246.82 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
61. Hba-x ENSMUSG00000055609 116.26 1207.96 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
62. Gm14586 ENSMUSG00000083621 114.66 1191.34 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
63. Hnrnpa2b1 ENSMUSG00000004980 114.13 1185.83 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
64. Pabpc1 ENSMUSG00000022283 113.06 1174.71 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
65. Rps9 ENSMUSG00000006333 113.06 1174.71 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
66. Hmgn1 ENSMUSG00000040681 112.00 1163.70 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
67. Hbb-bh1 ENSMUSG00000052217 111.46 1158.09 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
68. Hnrnph1 ENSMUSG00000007850 108.80 1130.45 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
69. Banf1 ENSMUSG00000024844 107.20 1113.83 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
70. Cdkn1c ENSMUSG00000037664 106.66 1108.22 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
71. Ywhab ENSMUSG00000018326 105.60 1097.20 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
72. Fkbp1a ENSMUSG00000032966 104.53 1086.09 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
73. Marcksl1 ENSMUSG00000047945 104.53 1086.09 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
74. U2af2 ENSMUSG00000030435 104.00 1080.58 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
75. Son ENSMUSG00000022961 103.46 1074.97 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
76. Rrm2 ENSMUSG00000020649 102.93 1069.46 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
77. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 102.40 1063.96 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
78. Ywhae ENSMUSG00000020849 101.33 1052.84 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
79. Hmga2 ENSMUSG00000056758 100.80 1047.33 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
80. Set ENSMUSG00000054766 100.80 1047.33 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.80 1047.33 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Rpl13a ENSMUSG00000074129 100.26 1041.72 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
83. Vim ENSMUSG00000026728 94.93 986.34 vimentin [Source:MGI Symbol;Acc:MGI:98932]
84. Gm14303 ENSMUSG00000081344 94.40 980.83 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
85. Ywhaz ENSMUSG00000022285 93.33 969.72 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
86. Anp32b ENSMUSG00000028333 91.73 953.09 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
87. Serbp1 ENSMUSG00000036371 91.73 953.09 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
88. Marcks ENSMUSG00000069662 90.66 941.97 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
89. Hnrnpa0 ENSMUSG00000007836 89.60 930.96 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
90. Grb10 ENSMUSG00000020176 88.53 919.84 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
91. Nnat ENSMUSG00000067786 88.00 914.34 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
92. H3f3b ENSMUSG00000016559 87.46 908.73 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
93. Gm5963 ENSMUSG00000052192 86.40 897.71 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
94. Rpl8 ENSMUSG00000003970 85.86 892.10 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
95. Trp53i11 ENSMUSG00000068735 85.86 892.10 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
96. Rps5 ENSMUSG00000012848 85.33 886.59 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
97. Ddx5 ENSMUSG00000020719 84.80 881.09 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Trim28 ENSMUSG00000005566 84.80 881.09 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
99. Gm17132 ENSMUSG00000061331 84.26 875.48 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
100. Scd2 ENSMUSG00000025203 82.13 853.35 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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