Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s12.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5694.64 59163.89 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2708.29 28137.51 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Cytb ENSMUSG00000064370 2418.99 25131.85 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. Ptma ENSMUSG00000026238 2057.36 21374.74 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Co2 ENSMUSG00000064354 1656.15 17206.40 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1489.02 15470.02 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Rnr1 ENSMUSG00000064337 1448.95 15053.72 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
8. mt-Co1 ENSMUSG00000064351 1237.35 12855.32 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1212.92 12601.51 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd5 ENSMUSG00000064367 1074.13 11159.57 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd4 ENSMUSG00000064363 977.37 10154.29 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Eef1a1 ENSMUSG00000037742 769.19 7991.42 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. mt-Nd3 ENSMUSG00000064360 706.64 7341.57 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 632.36 6569.84 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Hbb-y ENSMUSG00000052187 472.56 4909.61 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Rpsa ENSMUSG00000032518 456.92 4747.12 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
17. Npm1 ENSMUSG00000057113 350.88 3645.43 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. Tmsb4x ENSMUSG00000049775 324.49 3371.26 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
19. mt-Co3 ENSMUSG00000064358 307.38 3193.49 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
20. Mdk ENSMUSG00000027239 277.57 2883.79 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Nedd4 ENSMUSG00000032216 261.93 2721.30 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Ybx1 ENSMUSG00000028639 230.17 2391.33 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
23. H19 ENSMUSG00000000031 228.22 2371.07 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
24. Eif5a ENSMUSG00000078812 225.77 2345.61 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
25. Cfl1 ENSMUSG00000056201 219.91 2284.73 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Hsp90ab1 ENSMUSG00000023944 204.27 2122.24 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
27. Rpl23 ENSMUSG00000071415 199.38 2071.44 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
28. Rps20 ENSMUSG00000028234 194.99 2025.83 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
29. Ran ENSMUSG00000029430 187.65 1949.57 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
30. Igf2 ENSMUSG00000048583 186.19 1934.40 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
31. Tuba1b ENSMUSG00000023004 186.19 1934.40 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
32. Set ENSMUSG00000054766 175.44 1822.72 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Eif4g2 ENSMUSG00000005610 173.48 1802.35 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Hsp90aa1 ENSMUSG00000021270 172.99 1797.26 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
35. Rps3a1 ENSMUSG00000028081 172.02 1787.18 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
36. Chchd2 ENSMUSG00000070493 170.55 1771.91 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
37. Ldha ENSMUSG00000063229 168.11 1746.56 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
38. Atp5g3 ENSMUSG00000018770 167.13 1736.38 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Pkm ENSMUSG00000032294 164.69 1711.03 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
40. Rplp1 ENSMUSG00000007892 164.20 1705.94 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
41. Eef1b2 ENSMUSG00000025967 163.71 1700.85 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Rpl4 ENSMUSG00000032399 162.73 1690.67 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Hba-x ENSMUSG00000055609 161.27 1675.50 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
44. Gm13340 ENSMUSG00000083563 158.82 1650.04 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
45. Malat1 ENSMUSG00000092341 154.91 1609.42 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
46. Tpt1 ENSMUSG00000060126 151.00 1568.80 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
47. Tubb5 ENSMUSG00000001525 151.00 1568.80 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
48. Rpl39-ps ENSMUSG00000036305 148.56 1543.45 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
49. Hnrnpc ENSMUSG00000060373 147.09 1528.18 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Rps26 ENSMUSG00000025362 145.63 1513.01 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Rpl18a ENSMUSG00000045128 141.72 1472.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
52. Ubb ENSMUSG00000019505 140.25 1457.11 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
53. Rpl32 ENSMUSG00000057841 138.30 1436.85 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
54. Rps4x ENSMUSG00000031320 137.32 1426.67 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. Hba-a1 ENSMUSG00000069919 135.37 1406.41 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
56. 2810417H13Rik 132.43 1375.87 RIKEN cDNA 2810417H13 gene
57. Hbb-bh1 ENSMUSG00000052217 132.43 1375.87 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
58. Rpl37 ENSMUSG00000041841 130.48 1355.61 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
59. Hnrnpa2b1 ENSMUSG00000004980 127.06 1320.08 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
60. Hmgn1 ENSMUSG00000040681 126.57 1314.99 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
61. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 126.08 1309.90 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
62. Pabpc1 ENSMUSG00000022283 122.17 1269.27 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
63. Hmga2 ENSMUSG00000056758 120.71 1254.10 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
64. Son ENSMUSG00000022961 118.26 1228.65 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
65. Tuba1a ENSMUSG00000072235 116.80 1213.48 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
66. Rrm2 ENSMUSG00000020649 116.31 1208.39 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
67. Ccnd2 ENSMUSG00000000184 114.35 1188.03 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
68. Serbp1 ENSMUSG00000036371 109.95 1142.31 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
69. Marcksl1 ENSMUSG00000047945 109.47 1137.33 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
70. Pcbp1 ENSMUSG00000051695 108.00 1122.06 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Gm14586 ENSMUSG00000083621 106.53 1106.78 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
72. Vim ENSMUSG00000026728 102.62 1066.16 vimentin [Source:MGI Symbol;Acc:MGI:98932]
73. Gm10800 ENSMUSG00000075014 98.23 1020.55 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
74. Rps5 ENSMUSG00000012848 98.23 1020.55 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.23 1020.55 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Crabp1 ENSMUSG00000032291 97.74 1015.46 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
77. Hnrnph1 ENSMUSG00000007850 95.78 995.10 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
78. Anp32b ENSMUSG00000028333 95.29 990.01 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
79. Srsf3 ENSMUSG00000071172 92.36 959.56 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
80. Marcks ENSMUSG00000069662 90.41 939.31 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
81. Tubb2b ENSMUSG00000045136 90.41 939.31 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
82. Ywhab ENSMUSG00000018326 89.43 929.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
83. Calm1 ENSMUSG00000001175 88.94 924.03 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
84. H3f3b ENSMUSG00000016559 88.94 924.03 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
85. Grb10 ENSMUSG00000020176 85.52 888.50 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
86. Rpl26 ENSMUSG00000060938 85.52 888.50 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
87. Banf1 ENSMUSG00000024844 84.54 878.32 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
88. Hnrnpk ENSMUSG00000021546 84.54 878.32 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
89. Fkbp1a ENSMUSG00000032966 83.57 868.24 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
90. Nucks1 ENSMUSG00000026434 83.08 863.15 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
91. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 82.59 858.06 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
92. Rpl13a ENSMUSG00000074129 82.59 858.06 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
93. Rps9 ENSMUSG00000006333 82.59 858.06 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
94. Ywhaz ENSMUSG00000022285 82.59 858.06 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
95. Rpl8 ENSMUSG00000003970 81.61 847.88 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
96. Slc25a5 ENSMUSG00000016319 81.61 847.88 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
97. Map1b ENSMUSG00000052727 81.12 842.79 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
98. Eef2 ENSMUSG00000034994 79.17 822.53 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
99. Gnb2l1 Gnb2l1 78.19 812.35
100. Hba-a2 ENSMUSG00000069917 78.19 812.35 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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