Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s11.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 6319.07 65658.15 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Atp6 ENSMUSG00000064357 2427.49 25222.78 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2207.27 22934.59 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Rnr1 ENSMUSG00000064337 1962.02 20386.32 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
5. mt-Cytb ENSMUSG00000064370 1781.21 18507.62 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
6. mt-Nd5 ENSMUSG00000064367 1504.89 15636.53 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
7. mt-Co2 ENSMUSG00000064354 1187.78 12341.60 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd1 ENSMUSG00000064341 1094.13 11368.53 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
9. mt-Nd2 ENSMUSG00000064345 1074.66 11166.23 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1032.47 10727.86 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd4 ENSMUSG00000064363 921.67 9576.59 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
12. Actb ENSMUSG00000029580 701.91 7293.18 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Eef1a1 ENSMUSG00000037742 669.92 6960.79 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Nd3 ENSMUSG00000064360 465.93 4841.24 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Rpsa ENSMUSG00000032518 428.38 4451.07 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Hbb-y ENSMUSG00000052187 406.13 4219.88 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Tmsb4x ENSMUSG00000049775 312.48 3246.82 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
18. Mdk ENSMUSG00000027239 305.52 3174.50 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Npm1 ENSMUSG00000057113 305.06 3169.72 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Hsp90ab1 ENSMUSG00000023944 304.60 3164.94 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
21. Nedd4 ENSMUSG00000032216 292.08 3034.85 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Ybx1 ENSMUSG00000028639 276.78 2875.88 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
23. Eif5a ENSMUSG00000078812 246.18 2557.93 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
24. Cfl1 ENSMUSG00000056201 242.93 2524.16 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. mt-Co3 ENSMUSG00000064358 234.59 2437.50 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
26. H19 ENSMUSG00000000031 231.34 2403.73 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
27. Set ENSMUSG00000054766 206.77 2148.44 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
28. Gm26917 ENSMUSG00000097971 197.96 2056.90 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
29. Igf2 ENSMUSG00000048583 197.50 2052.12 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
30. Tuba1b ENSMUSG00000023004 191.47 1989.46 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
31. Hsp90aa1 ENSMUSG00000021270 183.59 1907.59 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
32. Eif4g2 ENSMUSG00000005610 177.10 1840.15 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Pkm ENSMUSG00000032294 174.78 1816.05 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Tubb5 ENSMUSG00000001525 174.78 1816.05 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Ran ENSMUSG00000029430 172.00 1787.16 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
36. Rps20 ENSMUSG00000028234 160.41 1666.74 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. Rpl23 ENSMUSG00000071415 159.48 1657.07 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
38. Atp5g3 ENSMUSG00000018770 159.02 1652.29 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Hba-x ENSMUSG00000055609 159.02 1652.29 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
40. Tpt1 ENSMUSG00000060126 157.17 1633.07 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Rps3a1 ENSMUSG00000028081 155.31 1613.75 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
42. Malat1 ENSMUSG00000092341 154.38 1604.08 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
43. Gm26924 Gm26924 153.92 1599.30
44. Pcbp1 ENSMUSG00000051695 150.21 1560.75 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
45. Hmga2 ENSMUSG00000056758 145.11 1507.76 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
46. Chchd2 ENSMUSG00000070493 144.18 1498.10 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Gm10800 ENSMUSG00000075014 143.72 1493.32 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
48. Pabpc1 ENSMUSG00000022283 143.72 1493.32 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
49. Rrm2 ENSMUSG00000020649 140.01 1454.77 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
50. Ldha ENSMUSG00000063229 135.84 1411.44 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
51. Hnrnpc ENSMUSG00000060373 134.45 1397.00 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
52. Rplp1 ENSMUSG00000007892 133.06 1382.56 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
53. Ubb ENSMUSG00000019505 132.59 1377.67 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
54. Gm13340 ENSMUSG00000083563 132.13 1372.89 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
55. Rpl4 ENSMUSG00000032399 131.20 1363.23 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
56. Rps26 ENSMUSG00000025362 130.74 1358.45 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
57. Anp32b ENSMUSG00000028333 127.96 1329.57 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
58. Ccnd2 ENSMUSG00000000184 126.10 1310.24 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
59. Marcksl1 ENSMUSG00000047945 124.71 1295.80 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
60. Hba-a1 ENSMUSG00000069919 124.25 1291.02 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
61. Rpl39-ps ENSMUSG00000036305 123.79 1286.24 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
62. Eef1b2 ENSMUSG00000025967 121.93 1266.91 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
63. Rps4x ENSMUSG00000031320 121.93 1266.91 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. 2810417H13Rik 120.54 1252.47 RIKEN cDNA 2810417H13 gene
65. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 116.37 1209.14 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
66. Rpl32 ENSMUSG00000057841 114.51 1189.81 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
67. Vim ENSMUSG00000026728 114.51 1189.81 vimentin [Source:MGI Symbol;Acc:MGI:98932]
68. Hbb-bh1 ENSMUSG00000052217 114.05 1185.03 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
69. Tuba1a ENSMUSG00000072235 114.05 1185.03 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
70. Hnrnpa2b1 ENSMUSG00000004980 111.73 1160.93 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
71. Hmgn1 ENSMUSG00000040681 108.95 1132.04 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
72. Rps9 ENSMUSG00000006333 108.49 1127.26 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
73. Ywhae ENSMUSG00000020849 108.49 1127.26 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
74. Marcks ENSMUSG00000069662 108.02 1122.38 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
75. Son ENSMUSG00000022961 108.02 1122.38 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
76. Crabp1 ENSMUSG00000032291 105.70 1098.27 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
77. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 101.53 1054.95 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
78. Rpl37 ENSMUSG00000041841 99.21 1030.84 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
79. Serbp1 ENSMUSG00000036371 97.36 1011.62 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
80. Trim28 ENSMUSG00000005566 96.43 1001.95 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
81. Gm14303 ENSMUSG00000081344 94.58 982.73 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
82. Hnrnph1 ENSMUSG00000007850 94.58 982.73 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
83. Sfpq ENSMUSG00000028820 93.19 968.29 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
84. Tubb2b ENSMUSG00000045136 93.19 968.29 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
85. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 92.26 958.63 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
86. Cdkn1c ENSMUSG00000037664 89.94 934.52 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
87. Trp53i11 ENSMUSG00000068735 89.48 929.74 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
88. Map1b ENSMUSG00000052727 89.01 924.86 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
89. Ywhaz ENSMUSG00000022285 88.09 915.30 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
90. Grb10 ENSMUSG00000020176 86.70 900.85 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
91. Nucks1 ENSMUSG00000026434 86.23 895.97 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
92. Rpl8 ENSMUSG00000003970 85.31 886.41 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
93. Morf4l1 ENSMUSG00000062270 84.38 876.75 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
94. Ywhab ENSMUSG00000018326 83.91 871.86 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
95. Eef2 ENSMUSG00000034994 83.45 867.09 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
96. Banf1 ENSMUSG00000024844 82.06 852.64 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
97. H2afy ENSMUSG00000015937 82.06 852.64 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
98. H3f3b ENSMUSG00000016559 80.21 833.42 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
99. Rps5 ENSMUSG00000012848 80.21 833.42 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
100. Top1 ENSMUSG00000070544 80.21 833.42 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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