Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s10.

Sample reads: 96,259. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Atp6 ENSMUSG00000064357 3292.24 34201.90 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
2. Ptma ENSMUSG00000026238 2424.44 25186.63 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Cytb ENSMUSG00000064370 2343.17 24342.35 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Co2 ENSMUSG00000064354 2068.54 21489.32 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1708.06 17744.42 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1281.37 13311.69 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1260.40 13093.84 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1240.08 12882.74 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd2 ENSMUSG00000064345 1030.99 10710.58 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Eef1a1 ENSMUSG00000037742 1026.41 10663.00 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Nd3 ENSMUSG00000064360 943.82 9805.01 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Actb ENSMUSG00000029580 798.97 8300.21 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Rnr1 ENSMUSG00000064337 547.94 5692.35 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
14. Rpsa ENSMUSG00000032518 543.35 5644.67 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. mt-Nd5 ENSMUSG00000064367 512.55 5324.70 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. Hbb-y ENSMUSG00000052187 503.37 5229.33 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Tmsb4x ENSMUSG00000049775 452.90 4705.02 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
18. mt-Co3 ENSMUSG00000064358 369.01 3833.51 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Npm1 ENSMUSG00000057113 346.07 3595.20 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Mdk ENSMUSG00000027239 306.09 3179.86 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Eif5a ENSMUSG00000078812 296.26 3077.74 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
22. H19 ENSMUSG00000000031 280.52 2914.22 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
23. Cfl1 ENSMUSG00000056201 258.90 2689.62 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Nedd4 ENSMUSG00000032216 252.34 2621.47 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Rpl23 ENSMUSG00000071415 239.89 2492.13 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
26. Tuba1b ENSMUSG00000023004 230.06 2390.01 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Rps26 ENSMUSG00000025362 219.57 2281.03 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
28. Ybx1 ENSMUSG00000028639 218.26 2267.42 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Set ENSMUSG00000054766 213.02 2212.99 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
30. Ldha ENSMUSG00000063229 209.08 2172.06 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
31. Rps20 ENSMUSG00000028234 208.43 2165.30 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
32. Gm13340 ENSMUSG00000083563 203.18 2110.76 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
33. Tubb5 ENSMUSG00000001525 203.18 2110.76 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Ran ENSMUSG00000029430 200.56 2083.55 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
35. Hsp90aa1 ENSMUSG00000021270 199.91 2076.79 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
36. Hsp90ab1 ENSMUSG00000023944 199.91 2076.79 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Rps3a1 ENSMUSG00000028081 199.25 2069.94 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
38. Hba-x ENSMUSG00000055609 189.42 1967.82 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
39. Atp5g3 ENSMUSG00000018770 187.45 1947.35 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
40. Pkm ENSMUSG00000032294 187.45 1947.35 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
41. Eif4g2 ENSMUSG00000005610 182.87 1899.77 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. Tpt1 ENSMUSG00000060126 181.55 1886.06 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
43. Rplp1 ENSMUSG00000007892 179.59 1865.70 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
44. Rpl39-ps ENSMUSG00000036305 178.93 1858.84 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
45. Rpl4 ENSMUSG00000032399 178.28 1852.09 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
46. Rps4x ENSMUSG00000031320 170.41 1770.33 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Chchd2 ENSMUSG00000070493 167.79 1743.11 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Eef1b2 ENSMUSG00000025967 163.86 1702.28 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Hnrnpa2b1 ENSMUSG00000004980 162.55 1688.67 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
50. Rrm2 ENSMUSG00000020649 160.58 1668.21 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
51. Ubb ENSMUSG00000019505 159.27 1654.60 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
52. Hba-a1 ENSMUSG00000069919 155.99 1620.52 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
53. Hbb-bh1 ENSMUSG00000052217 154.03 1600.16 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
54. Igf2 ENSMUSG00000048583 152.72 1586.55 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
55. Hnrnpc ENSMUSG00000060373 149.44 1552.48 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
56. Pabpc1 ENSMUSG00000022283 146.16 1518.40 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
57. Hmgn1 ENSMUSG00000040681 142.88 1484.33 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
58. Rpl32 ENSMUSG00000057841 138.30 1436.75 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
59. Tuba1a ENSMUSG00000072235 137.64 1429.89 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
60. Rpl37 ENSMUSG00000041841 135.67 1409.43 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
61. Pcbp1 ENSMUSG00000051695 129.78 1348.24 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
62. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 126.50 1314.16 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
63. Rpl18a ENSMUSG00000045128 125.84 1307.31 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
64. Hnrnph1 ENSMUSG00000007850 119.29 1239.26 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
65. Rpl13a ENSMUSG00000074129 117.32 1218.80 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
66. Eef2 ENSMUSG00000034994 115.36 1198.43 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
67. Vim ENSMUSG00000026728 115.36 1198.43 vimentin [Source:MGI Symbol;Acc:MGI:98932]
68. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 114.70 1191.58 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
69. Anp32b ENSMUSG00000028333 114.05 1184.82 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
70. 2810417H13Rik 112.73 1171.11 RIKEN cDNA 2810417H13 gene
71. Banf1 ENSMUSG00000024844 112.73 1171.11 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
72. Gm5963 ENSMUSG00000052192 109.46 1137.14 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
73. Paics ENSMUSG00000029247 108.80 1130.28 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
74. Ccnd2 ENSMUSG00000000184 108.15 1123.53 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
75. Crabp1 ENSMUSG00000032291 106.84 1109.92 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
76. Marcksl1 ENSMUSG00000047945 106.84 1109.92 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
77. Son ENSMUSG00000022961 106.18 1103.07 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
78. Gm14303 ENSMUSG00000081344 104.21 1082.60 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
79. Rps9 ENSMUSG00000006333 104.21 1082.60 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
80. Ywhaz ENSMUSG00000022285 104.21 1082.60 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
81. Tubb2b ENSMUSG00000045136 102.90 1068.99 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
82. Gm14586 ENSMUSG00000083621 101.59 1055.38 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
83. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.63 1035.02 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
84. Rpl26 ENSMUSG00000060938 98.31 1021.31 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
85. Trim28 ENSMUSG00000005566 98.31 1021.31 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
86. Marcks ENSMUSG00000069662 97.66 1014.55 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
87. Serbp1 ENSMUSG00000036371 97.66 1014.55 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
88. Ywhae ENSMUSG00000020849 94.38 980.48 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
89. Hnrnpk ENSMUSG00000021546 93.07 966.87 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
90. Slc25a5 ENSMUSG00000016319 92.42 960.12 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
91. Rpl8 ENSMUSG00000003970 91.76 953.26 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
92. Ddx5 ENSMUSG00000020719 91.11 946.51 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
93. Cadm1 ENSMUSG00000032076 90.45 939.65 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
94. U2af2 ENSMUSG00000030435 89.79 932.80 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
95. Rps15 ENSMUSG00000063457 88.48 919.19 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
96. Rps5 ENSMUSG00000012848 88.48 919.19 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
97. Sub1 ENSMUSG00000022205 87.83 912.43 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
98. Kpnb1 ENSMUSG00000001440 86.52 898.83 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Cdkn1c ENSMUSG00000037664 85.86 891.97 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
100. Ywhab ENSMUSG00000018326 85.21 885.22 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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