Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_1, section s1.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5061.99 52589.84 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 2338.72 24297.34 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2280.04 23687.71 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Cytb ENSMUSG00000064370 1706.89 17733.16 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Co2 ENSMUSG00000064354 1288.81 13389.66 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1072.96 11147.16 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1039.43 10798.81 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr1 ENSMUSG00000064337 802.63 8338.65 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
9. mt-Nd2 ENSMUSG00000064345 743.95 7729.02 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd4 ENSMUSG00000064363 733.47 7620.14 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
11. mt-Nd5 ENSMUSG00000064367 683.17 7097.56 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Eef1a1 ENSMUSG00000037742 682.13 7086.76 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Actb ENSMUSG00000029580 528.10 5486.52 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Nd3 ENSMUSG00000064360 513.43 5334.11 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Rpsa ENSMUSG00000032518 470.47 4887.79 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Mdk ENSMUSG00000027239 378.26 3929.80 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Ybx1 ENSMUSG00000028639 338.44 3516.11 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
18. Tmsb4x ENSMUSG00000049775 311.20 3233.11 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
19. Npm1 ENSMUSG00000057113 305.96 3178.67 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. mt-Co3 ENSMUSG00000064358 292.34 3037.17 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
21. Malat1 ENSMUSG00000092341 278.72 2895.67 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
22. Hbb-y ENSMUSG00000052187 269.29 2797.70 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Tuba1b ENSMUSG00000023004 267.19 2775.88 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Hsp90ab1 ENSMUSG00000023944 248.33 2579.94 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
25. Nedd4 ENSMUSG00000032216 238.90 2481.97 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Set ENSMUSG00000054766 231.57 2405.82 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
27. Eif5a ENSMUSG00000078812 224.23 2329.56 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
28. Eif4g2 ENSMUSG00000005610 215.85 2242.50 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Rpl23 ENSMUSG00000071415 208.51 2166.24 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
30. Atp5g3 ENSMUSG00000018770 202.23 2101.00 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
31. Cfl1 ENSMUSG00000056201 198.04 2057.47 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Ran ENSMUSG00000029430 187.56 1948.59 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
33. Rps3a1 ENSMUSG00000028081 184.42 1915.97 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
34. Rrm2 ENSMUSG00000020649 184.42 1915.97 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
35. Hsp90aa1 ENSMUSG00000021270 178.13 1850.62 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
36. Rps20 ENSMUSG00000028234 167.65 1741.74 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
37. H19 ENSMUSG00000000031 166.60 1730.83 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
38. Tpt1 ENSMUSG00000060126 164.51 1709.12 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Pcbp1 ENSMUSG00000051695 163.46 1698.21 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
40. Rps26 ENSMUSG00000025362 161.36 1676.40 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
41. Map1b ENSMUSG00000052727 154.03 1600.24 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
42. Pkm ENSMUSG00000032294 154.03 1600.24 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
43. Pabpc1 ENSMUSG00000022283 152.98 1589.33 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
44. Gm26924 Gm26924 150.89 1567.62
45. Gm13340 ENSMUSG00000083563 149.84 1556.71 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
46. Vim ENSMUSG00000026728 149.84 1556.71 vimentin [Source:MGI Symbol;Acc:MGI:98932]
47. Chchd2 ENSMUSG00000070493 148.79 1545.80 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Marcksl1 ENSMUSG00000047945 145.65 1513.18 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
49. Eef1b2 ENSMUSG00000025967 144.60 1502.27 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. Ccnd2 ENSMUSG00000000184 143.55 1491.36 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
51. Tubb5 ENSMUSG00000001525 141.45 1469.55 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
52. Hba-x ENSMUSG00000055609 138.31 1436.93 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
53. Rplp1 ENSMUSG00000007892 137.26 1426.02 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. U2af2 ENSMUSG00000030435 136.22 1415.21 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
55. Hmga2 ENSMUSG00000056758 135.17 1404.30 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
56. 2810417H13Rik 134.12 1393.39 RIKEN cDNA 2810417H13 gene
57. Hmgn1 ENSMUSG00000040681 128.88 1338.96 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
58. Gm26917 ENSMUSG00000097971 127.83 1328.05 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
59. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 125.74 1306.33 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
60. Rpl32 ENSMUSG00000057841 124.69 1295.42 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
61. Top2a ENSMUSG00000020914 123.64 1284.52 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
62. Hnrnpc ENSMUSG00000060373 122.59 1273.61 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
63. Tubb2b ENSMUSG00000045136 119.45 1240.99 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
64. Ldha ENSMUSG00000063229 118.40 1230.08 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
65. Rps4x ENSMUSG00000031320 118.40 1230.08 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Hnrnpa2b1 ENSMUSG00000004980 115.26 1197.45 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
67. Rps9 ENSMUSG00000006333 114.21 1186.55 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
68. Serbp1 ENSMUSG00000036371 113.16 1175.64 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
69. Sox2 ENSMUSG00000074637 113.16 1175.64 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
70. Gm17132 ENSMUSG00000061331 111.07 1153.92 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
71. Rps5 ENSMUSG00000012848 110.02 1143.02 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Rpl4 ENSMUSG00000032399 108.97 1132.11 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
73. Rpl8 ENSMUSG00000003970 107.92 1121.20 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
74. Anp32b ENSMUSG00000028333 105.83 1099.49 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
75. Pbx1 ENSMUSG00000052534 105.83 1099.49 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
76. Rpl39-ps ENSMUSG00000036305 105.83 1099.49 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
77. Nucks1 ENSMUSG00000026434 103.73 1077.67 nuclear casein kinase and cyclin-dependent kinase substrate 1 [Source:MGI Symbol;Acc:MGI:1934811]
78. Rpl37 ENSMUSG00000041841 103.73 1077.67 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
79. Eef2 ENSMUSG00000034994 101.64 1055.95 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
80. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 100.59 1045.05 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.59 1045.05 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Txn1 ENSMUSG00000028367 100.59 1045.05 thioredoxin 1 [Source:MGI Symbol;Acc:MGI:98874]
83. Ubb ENSMUSG00000019505 100.59 1045.05 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
84. Son ENSMUSG00000022961 99.54 1034.14 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
85. Marcks ENSMUSG00000069662 98.49 1023.23 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
86. Grb10 ENSMUSG00000020176 97.45 1012.42 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
87. Gm14303 ENSMUSG00000081344 96.40 1001.52 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
88. Ywhaz ENSMUSG00000022285 96.40 1001.52 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
89. Nasp ENSMUSG00000028693 95.35 990.61 nuclear autoantigenic sperm protein (histone-binding) [Source:MGI Symbol;Acc:MGI:1355328]
90. Paics ENSMUSG00000029247 95.35 990.61 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
91. Ywhae ENSMUSG00000020849 95.35 990.61 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
92. Ywhab ENSMUSG00000018326 93.26 968.89 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
93. Hnrnph1 ENSMUSG00000007850 92.21 957.98 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
94. H3f3b ENSMUSG00000016559 91.16 947.08 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
95. Hmgb2 ENSMUSG00000054717 91.16 947.08 high mobility group box 2 [Source:MGI Symbol;Acc:MGI:96157]
96. Rpl18a ENSMUSG00000045128 91.16 947.08 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
97. Trp53i11 ENSMUSG00000068735 89.06 925.26 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
98. Gm14586 ENSMUSG00000083621 88.02 914.45 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
99. Sf3b4 ENSMUSG00000068856 88.02 914.45 splicing factor 3b, subunit 4 [Source:MGI Symbol;Acc:MGI:109580]
100. Srsf3 ENSMUSG00000071172 85.92 892.64 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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