Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice2, section s74.

Sample reads: 391,632. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. RPL41 ENSG00000229117 14794.40 37776.31 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
2. SFRP1 ENSG00000104332 5795.09 14797.30 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
3. EEF1A1 ENSG00000156508 4908.21 12532.72 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
4. HIST1H4C ENSG00000197061 4640.91 11850.19 histone cluster 1 H4 family member c [Source:HGNC Symbol;Acc:HGNC:4787]
5. RPS27 ENSG00000177954 4273.45 10911.91 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
6. RPS12 ENSG00000112306 3969.53 10135.88 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
7. RPL10A ENSG00000198755 2741.44 7000.05 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
8. COL3A1 ENSG00000168542 2692.40 6874.83 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
9. RPL31 ENSG00000071082 2469.30 6305.16 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
10. RPL15 ENSG00000174748 2465.85 6296.35 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
11. RPL37 ENSG00000145592 2373.98 6061.77 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
12. RPS15A ENSG00000134419 2363.62 6035.31 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
13. ACTB ENSG00000075624 2288.34 5843.09 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
14. RPS20 ENSG00000008988 2121.87 5418.02 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
15. PTMA ENSG00000187514 2113.58 5396.86 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
16. PPIA ENSG00000196262 1911.21 4880.12 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
17. TPT1 ENSG00000133112 1877.36 4793.69 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
18. RPS6 ENSG00000137154 1848.35 4719.61 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
19. RPL34 ENSG00000109475 1846.97 4716.09 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
20. RPL5 ENSG00000122406 1840.06 4698.45 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
21. RPS23 ENSG00000186468 1813.81 4631.42 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
22. ACTG1 ENSG00000184009 1719.19 4389.81 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
23. RPL23 ENSG00000125691 1712.28 4372.17 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
24. RPS29 ENSG00000213741 1667.38 4257.52 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
25. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 1634.92 4174.64 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
26. GNAS ENSG00000087460 1577.59 4028.25 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
27. MTRNR2L8 ENSG00000255823 1571.37 4012.37 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
28. TUBA1B ENSG00000123416 1537.53 3925.96 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
29. RPS27A ENSG00000143947 1496.78 3821.91 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
30. RPL7A ENSG00000148303, ENSG00000280858 1472.60 3760.17 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
31. RPS3A ENSG00000145425 1442.90 3684.33 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
32. MDK ENSG00000110492 1429.09 3649.07 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
33. HBE1 ENSG00000213931 1393.86 3559.11 hemoglobin subunit epsilon 1 [Source:HGNC Symbol;Acc:HGNC:4830]
34. RPL18A ENSG00000105640 1392.48 3555.59 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
35. HNRNPC ENSG00000092199 1380.05 3523.85 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
36. RPS2 ENSG00000140988 1315.81 3359.82 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
37. RPL11 ENSG00000142676 1315.12 3358.05 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
38. RPL30 ENSG00000156482 1295.78 3308.67 ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333]
39. MTRNR2L1 ENSG00000256618 1257.10 3209.90 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
40. RPL13AP20 ENSG00000234498 1252.95 3199.31 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
41. RPS13 ENSG00000110700 1234.31 3151.71 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
42. RPS16 ENSG00000105193 1226.02 3130.54 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. COL1A1 ENSG00000108821 1187.34 3031.78 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
44. TMSB4X ENSG00000205542 1098.93 2806.03 thymosin beta 4 X-linked [Source:HGNC Symbol;Acc:HGNC:11881]
45. RPL9 ENSG00000163682 1082.35 2763.69 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
46. RPS11 ENSG00000142534 1074.75 2744.29 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
47. RPL10 ENSG00000147403 1061.63 2710.79 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
48. ID2 ENSG00000115738 1056.10 2696.67 inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]
49. RPL35 ENSG00000136942 1025.71 2619.07 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
50. NPM1 ENSG00000181163 967.69 2470.92 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
51. MTRNR2L2 ENSG00000271043 930.39 2375.68 MT-RNR2 like 2 [Source:HGNC Symbol;Acc:HGNC:37156]
52. RPL13 ENSG00000167526 926.25 2365.10 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
53. UBB ENSG00000170315 925.56 2363.34 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
54. RPS8 ENSG00000142937 924.87 2361.58 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
55. RPS5 ENSG00000083845 916.58 2340.41 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
56. NGFRAP1 NGFRAP1 906.91 2315.72
57. HSP90AB1 ENSG00000096384 899.31 2296.32 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
58. RPL35A ENSG00000182899 893.09 2280.43 ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345]
59. RPS28 ENSG00000233927 893.09 2280.43 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
60. HMGB1 ENSG00000189403 869.61 2220.48 high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]
61. RPL22 ENSG00000116251 862.01 2201.07 ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:10315]
62. RPLP0 ENSG00000089157 859.94 2195.79 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
63. VIM ENSG00000026025 843.36 2153.45 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
64. RPS7 ENSG00000171863 838.53 2141.12 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
65. H2AFZ ENSG00000164032 830.24 2119.95 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
66. HMGN1 ENSG00000205581 824.02 2104.07 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
67. RPS25 ENSG00000118181, ENSG00000280831 814.35 2079.38 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. MALAT1 ENSG00000251562 791.56 2021.18 metastasis associated lung adenocarcinoma transcript 1 [Source:HGNC Symbol;Acc:HGNC:29665]
69. RPL26 ENSG00000161970 756.33 1931.23 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
70. PFN1 ENSG00000108518 751.50 1918.89 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
71. MYL6 ENSG00000092841 739.06 1887.13 myosin light chain 6 [Source:HGNC Symbol;Acc:HGNC:7587]
72. HNRNPD ENSG00000138668 732.85 1871.27 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
73. RPL32 ENSG00000144713 703.84 1797.20 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
74. SRP14 ENSG00000140319 703.15 1795.44 signal recognition particle 14 [Source:HGNC Symbol;Acc:HGNC:11299]
75. RPL6 ENSG00000089009 695.55 1776.03 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
76. FAU ENSG00000149806 667.23 1703.72 FAU, ubiquitin like and ribosomal protein S30 fusion [Source:HGNC Symbol;Acc:HGNC:3597]
77. EIF4G2 ENSG00000110321 662.39 1691.36 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
78. SUMO2 ENSG00000188612 661.70 1689.60 small ubiquitin-like modifier 2 [Source:HGNC Symbol;Acc:HGNC:11125]
79. SERF2 ENSG00000140264 656.18 1675.50 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
80. RPL27A ENSG00000166441 634.77 1620.83 ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329]
81. MORF4L1 ENSG00000185787 629.93 1608.48 mortality factor 4 like 1 [Source:HGNC Symbol;Acc:HGNC:16989]
82. STMN1 ENSG00000117632 623.71 1592.59 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
83. TOMM6 ENSG00000214736 612.66 1564.38 translocase of outer mitochondrial membrane 6 [Source:HGNC Symbol;Acc:HGNC:34528]
84. RPL39 ENSG00000198918 603.68 1541.45 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
85. HMGA2 ENSG00000149948 598.85 1529.12 high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
86. TMEM258 ENSG00000134825 585.03 1493.83 transmembrane protein 258 [Source:HGNC Symbol;Acc:HGNC:1164]
87. RPS14 ENSG00000164587 571.22 1458.56 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
88. RPS21 ENSG00000171858 568.46 1451.52 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
89. RPL3 ENSG00000100316 566.39 1446.23 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
90. RPLP1 ENSG00000137818 559.48 1428.59 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
91. UBA52 ENSG00000221983 545.66 1393.30 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:HGNC:12458]
92. COX7A2 ENSG00000112695 527.01 1345.68 cytochrome c oxidase subunit 7A2 [Source:HGNC Symbol;Acc:HGNC:2288]
93. NUCKS1 ENSG00000069275 518.04 1322.77 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:HGNC Symbol;Acc:HGNC:29923]
94. PCBP1 ENSG00000169564 513.89 1312.18 poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8647]
95. H3F3B ENSG00000132475 511.82 1306.89 H3 histone family member 3B [Source:HGNC Symbol;Acc:HGNC:4765]
96. ZFP36L1 ENSG00000185650 508.37 1298.08 ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]
97. HNRNPK ENSG00000165119 504.91 1289.25 heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:HGNC:5044]
98. RPS19 ENSG00000105372 503.53 1285.72 ribosomal protein S19 [Source:HGNC Symbol;Acc:HGNC:10402]
99. TPM1 ENSG00000140416 502.15 1282.20 tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010]
100. TMA7 ENSG00000232112 493.86 1261.03 translation machinery associated 7 homolog [Source:HGNC Symbol;Acc:HGNC:26932]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA