Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for COL1A1

Gene Name Gene ID Reads Annotation
COL1A1 ENSG00000108821 71290 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]



Genes with expression patterns similar to COL1A1

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. COL1A1 ENSG00000108821 71290 2 1.000 1.000 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
2. COL6A2 ENSG00000142173 2550 1.736 0.940 0.796 collagen type VI alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2212]
3. COL5A1 ENSG00000130635 11942 1.736 0.893 0.843 collagen type V alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2209]
4. COL1A2 ENSG00000164692 43340 1.731 0.935 0.796 collagen type I alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2198]
5. SPARC ENSG00000113140 39707 1.728 0.953 0.775 secreted protein acidic and cysteine rich [Source:HGNC Symbol;Acc:HGNC:11219]
6. GATA6-AS1 ENSG00000266010 839 1.662 0.893 0.769 GATA6 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:48840]
7. MYRF ENSG00000124920 5866 1.662 0.865 0.797 myelin regulatory factor [Source:HGNC Symbol;Acc:HGNC:1181]
8. GATA5 ENSG00000130700 1069 1.648 0.879 0.769 GATA binding protein 5 [Source:HGNC Symbol;Acc:HGNC:15802]
9. TRANK1 ENSG00000168016 5941 1.64 0.860 0.780 tetratricopeptide repeat and ankyrin repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:29011]
10. PLAT ENSG00000104368 11877 1.606 0.784 0.822 plasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]
11. IFITM3 ENSG00000142089 57239 1.592 0.871 0.721 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
12. UNC5B ENSG00000107731 3573 1.565 0.754 0.811 unc-5 netrin receptor B [Source:HGNC Symbol;Acc:HGNC:12568]
13. RSPO4 ENSG00000101282 381 1.501 0.778 0.723 R-spondin 4 [Source:HGNC Symbol;Acc:HGNC:16175]
14. AXL ENSG00000167601 3992 1.482 0.767 0.715 AXL receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:905]
15. STAT6 ENSG00000166888 2411 1.474 0.768 0.706 signal transducer and activator of transcription 6 [Source:HGNC Symbol;Acc:HGNC:11368]
16. AHNAK ENSG00000124942 11800 0.934 0.934 - AHNAK nucleoprotein [Source:HGNC Symbol;Acc:HGNC:347]
17. HAND2 ENSG00000164107 5416 0.932 0.932 - heart and neural crest derivatives expressed 2 [Source:HGNC Symbol;Acc:HGNC:4808]
18. MYL9 ENSG00000101335 4604 0.928 0.928 - myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]
19. FREM2 ENSG00000150893 3376 0.924 0.924 - FRAS1 related extracellular matrix protein 2 [Source:HGNC Symbol;Acc:HGNC:25396]
20. SFRP1 ENSG00000104332 280077 0.92 0.920 - secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
21. APOBEC3C ENSG00000244509 3066 0.915 0.915 - apolipoprotein B mRNA editing enzyme catalytic subunit 3C [Source:HGNC Symbol;Acc:HGNC:17353]
22. GPC3 ENSG00000147257 34465 0.914 0.914 - glypican 3 [Source:HGNC Symbol;Acc:HGNC:4451]
23. COL3A1 ENSG00000168542 140021 0.909 0.909 - collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
24. RBPMS ENSG00000157110 10094 0.907 0.907 - RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]
25. PODXL ENSG00000128567 4375 0.896 0.896 - podocalyxin like [Source:HGNC Symbol;Acc:HGNC:9171]
26. PEG3 ENSG00000198300 11207 0.895 0.895 - paternally expressed 3 [Source:HGNC Symbol;Acc:HGNC:8826]
27. SERINC5 ENSG00000164300 3838 0.894 0.894 - serine incorporator 5 [Source:HGNC Symbol;Acc:HGNC:18825]
28. KRT19 ENSG00000171345 1700 0.893 0.893 - keratin 19 [Source:HGNC Symbol;Acc:HGNC:6436]
29. BMP4 ENSG00000125378 10639 0.891 0.891 - bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]
30. SHISA3 ENSG00000178343 7060 0.886 0.886 - shisa family member 3 [Source:HGNC Symbol;Acc:HGNC:25159]
31. DSP ENSG00000096696 5097 0.885 0.885 - desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
32. CCDC3 ENSG00000151468 3108 0.882 0.882 - coiled-coil domain containing 3 [Source:HGNC Symbol;Acc:HGNC:23813]
33. ARHGAP23 ENSG00000273780, ENSG00000275832 6311 0.881 0.881 - Rho GTPase activating protein 23 [Source:HGNC Symbol;Acc:HGNC:29293]
34. COL6A1 ENSG00000142156 20649 0.881 0.881 - collagen type VI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2211]
35. SLC9A3R1 ENSG00000109062 4036 0.88 0.880 - SLC9A3 regulator 1 [Source:HGNC Symbol;Acc:HGNC:11075]
36. WT1 ENSG00000184937 5369 0.877 0.877 - Wilms tumor 1 [Source:HGNC Symbol;Acc:HGNC:12796]
37. GATA6 ENSG00000141448 3614 0.877 0.877 - GATA binding protein 6 [Source:HGNC Symbol;Acc:HGNC:4174]
38. ROR1 ENSG00000185483 9648 0.877 0.877 - receptor tyrosine kinase like orphan receptor 1 [Source:HGNC Symbol;Acc:HGNC:10256]
39. NRK ENSG00000123572 4309 0.877 0.877 - Nik related kinase [Source:HGNC Symbol;Acc:HGNC:25391]
40. RFTN1 ENSG00000131378 3531 0.877 0.877 - raftlin, lipid raft linker 1 [Source:HGNC Symbol;Acc:HGNC:30278]
41. PLAGL1 ENSG00000118495 6344 0.876 0.876 - PLAG1 like zinc finger 1 [Source:HGNC Symbol;Acc:HGNC:9046]
42. BST2 ENSG00000130303 1588 0.876 0.876 - bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]
43. MYH9 ENSG00000100345 12447 0.875 0.875 - myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
44. KRT8 ENSG00000170421 12050 0.874 0.874 - keratin 8 [Source:HGNC Symbol;Acc:HGNC:6446]
45. LAMA5 ENSG00000130702 4073 0.873 0.873 - laminin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
46. GNG12 ENSG00000172380 3600 0.873 0.873 - G protein subunit gamma 12 [Source:HGNC Symbol;Acc:HGNC:19663]
47. MAGI2-AS3 ENSG00000234456 5066 0.871 0.871 - MAGI2 antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40862]
48. CNTN4 ENSG00000144619 2198 0.868 0.868 - contactin 4 [Source:HGNC Symbol;Acc:HGNC:2174]
49. BAMBI ENSG00000095739 2641 0.868 0.868 - BMP and activin membrane bound inhibitor [Source:HGNC Symbol;Acc:HGNC:30251]
50. TCF21 ENSG00000118526 1286 0.867 0.867 - transcription factor 21 [Source:HGNC Symbol;Acc:HGNC:11632]
51. PDE3A ENSG00000172572 3123 0.865 0.865 - phosphodiesterase 3A [Source:HGNC Symbol;Acc:HGNC:8778]
52. CREB3L1 ENSG00000157613 755 0.864 0.864 - cAMP responsive element binding protein 3 like 1 [Source:HGNC Symbol;Acc:HGNC:18856]
53. PHACTR2 ENSG00000112419 13720 0.863 0.863 - phosphatase and actin regulator 2 [Source:HGNC Symbol;Acc:HGNC:20956]
54. KCTD12 ENSG00000178695 23035 0.863 0.863 - potassium channel tetramerization domain containing 12 [Source:HGNC Symbol;Acc:HGNC:14678]
55. TIMP1 ENSG00000102265 19585 0.854 0.854 - TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]
56. SVEP1 ENSG00000165124 1854 0.854 0.854 - sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
57. TRABD2B ENSG00000269113 1426 0.853 0.853 - TraB domain containing 2B [Source:HGNC Symbol;Acc:HGNC:44200]
58. IGFBP3 ENSG00000146674 2312 0.852 0.852 - insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]
59. MIR503HG ENSG00000223749 600 0.851 0.851 - MIR503 host gene [Source:HGNC Symbol;Acc:HGNC:28258]
60. SPINT2 ENSG00000167642 25745 0.851 0.851 - serine peptidase inhibitor, Kunitz type 2 [Source:HGNC Symbol;Acc:HGNC:11247]
61. GUCY1A3 1501 0.847 0.847 - guanylate cyclase 1, soluble, alpha 3, transcript variant X7
62. SYTL5 ENSG00000147041 256 0.844 0.844 - synaptotagmin like 5 [Source:HGNC Symbol;Acc:HGNC:15589]
63. DLK1 ENSG00000185559 70813 0.842 0.842 - delta like non-canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2907]
64. PNKD ENSG00000127838 3640 0.842 0.842 - PNKD, MBL domain containing [Source:HGNC Symbol;Acc:HGNC:9153]
65. PVRL2 PVRL2 2781 0.841 0.841 -
66. NFIB ENSG00000147862 8306 0.839 0.839 - nuclear factor I B [Source:HGNC Symbol;Acc:HGNC:7785]
67. DCN ENSG00000011465 12980 0.838 0.838 - decorin [Source:HGNC Symbol;Acc:HGNC:2705]
68. ENPEP ENSG00000138792 1005 0.836 0.836 - glutamyl aminopeptidase [Source:HGNC Symbol;Acc:HGNC:3355]
69. MATN2 ENSG00000132561 968 0.836 0.836 - matrilin 2 [Source:HGNC Symbol;Acc:HGNC:6908]
70. RHOBTB3 ENSG00000164292 20064 0.835 0.835 - Rho related BTB domain containing 3 [Source:HGNC Symbol;Acc:HGNC:18757]
71. MXRA8 ENSG00000162576 6851 0.835 0.835 - matrix remodeling associated 8 [Source:HGNC Symbol;Acc:HGNC:7542]
72. ATP2B4 ENSG00000058668 5432 0.835 0.835 - ATPase plasma membrane Ca2+ transporting 4 [Source:HGNC Symbol;Acc:HGNC:817]
73. TRPM5 ENSG00000070985 137 0.833 0.833 - transient receptor potential cation channel subfamily M member 5 [Source:HGNC Symbol;Acc:HGNC:14323]
74. LAMC1 ENSG00000135862 20353 0.833 0.833 - laminin subunit gamma 1 [Source:HGNC Symbol;Acc:HGNC:6492]
75. ITM2C ENSG00000135916 51525 0.832 0.832 - integral membrane protein 2C [Source:HGNC Symbol;Acc:HGNC:6175]
76. MPP5 ENSG00000072415 2853 0.832 0.832 - membrane palmitoylated protein 5 [Source:HGNC Symbol;Acc:HGNC:18669]
77. TMEM26 ENSG00000196932 357 0.831 0.831 - transmembrane protein 26 [Source:HGNC Symbol;Acc:HGNC:28550]
78. POSTN ENSG00000133110 5228 0.829 0.829 - periostin [Source:HGNC Symbol;Acc:HGNC:16953]
79. NPNT ENSG00000168743 749 0.826 0.826 - nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
80. ALDH1A2 ENSG00000128918 11780 0.826 0.826 - aldehyde dehydrogenase 1 family member A2 [Source:HGNC Symbol;Acc:HGNC:15472]
81. FBXO17 ENSG00000269190, ENSG00000282954 4383 0.825 0.825 - F-box protein 17 [Source:HGNC Symbol;Acc:HGNC:18754]
82. NPHS1 ENSG00000161270 1427 0.825 0.825 - NPHS1, nephrin [Source:HGNC Symbol;Acc:HGNC:7908]
83. SMAD6 ENSG00000137834 805 0.825 0.825 - SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]
84. GRN ENSG00000030582 15538 0.824 0.824 - granulin precursor [Source:HGNC Symbol;Acc:HGNC:4601]
85. CTGF ENSG00000118523 4166 0.823 0.823 - connective tissue growth factor [Source:HGNC Symbol;Acc:HGNC:2500]
86. MMP11 ENSG00000099953, ENSG00000275365 2049 0.823 0.823 - matrix metallopeptidase 11 [Source:HGNC Symbol;Acc:HGNC:7157]
87. MEG3 ENSG00000214548 19404 0.821 0.821 - maternally expressed 3 [Source:HGNC Symbol;Acc:HGNC:14575]
88. SLC48A1 ENSG00000211584 2891 0.821 0.821 - solute carrier family 48 member 1 [Source:HGNC Symbol;Acc:HGNC:26035]
89. GUCY1B3 1302 0.82 0.820 - guanylate cyclase 1, soluble, beta 3, transcript variant X5
90. TGFBR3 ENSG00000069702 8468 0.817 0.817 - transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]
91. RNF207 ENSG00000158286 362 0.816 0.816 - ring finger protein 207 [Source:HGNC Symbol;Acc:HGNC:32947]
92. CKAP4 ENSG00000136026 9372 0.816 0.816 - cytoskeleton associated protein 4 [Source:HGNC Symbol;Acc:HGNC:16991]
93. CDKN1C ENSG00000129757, ENSG00000273707 21622 0.816 0.816 - cyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]
94. NPHS2 ENSG00000116218 6339 0.814 0.814 - NPHS2, podocin [Source:HGNC Symbol;Acc:HGNC:13394]
95. PDE11A ENSG00000128655, ENSG00000284741 1225 0.814 0.814 - phosphodiesterase 11A [Source:HGNC Symbol;Acc:HGNC:8773]
96. TMCC3 ENSG00000057704 1309 0.814 0.814 - transmembrane and coiled-coil domain family 3 [Source:HGNC Symbol;Acc:HGNC:29199]
97. NEBL ENSG00000078114 534 0.812 0.812 - nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
98. CD151 ENSG00000177697 7219 0.811 0.811 - CD151 molecule (Raph blood group) [Source:HGNC Symbol;Acc:HGNC:1630]
99. ORAI3 ENSG00000175938 736 0.811 0.811 - ORAI calcium release-activated calcium modulator 3 [Source:HGNC Symbol;Acc:HGNC:28185]
100. CTSB ENSG00000164733 7440 0.81 0.810 - cathepsin B [Source:HGNC Symbol;Acc:HGNC:2527]

There are 164 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA