Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice2, section s53.

Sample reads: 391,652. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. RPL41 ENSG00000229117 12511.85 31946.51 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
2. ACTB ENSG00000075624 3938.80 10056.94 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
3. RPS27 ENSG00000177954 3591.65 9170.56 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
4. EEF1A1 ENSG00000156508 3416.02 8722.12 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
5. HBE1 ENSG00000213931 2750.03 7021.65 hemoglobin subunit epsilon 1 [Source:HGNC Symbol;Acc:HGNC:4830]
6. PTMA ENSG00000187514 2385.20 6090.13 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
7. TUBA1B ENSG00000123416 2267.33 5789.17 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
8. PPIA ENSG00000196262 2205.44 5631.15 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
9. RPS12 ENSG00000112306 2167.72 5534.84 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
10. ACTG1 ENSG00000184009 2059.28 5257.96 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
11. SFRP1 ENSG00000104332 2013.31 5140.58 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
12. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 1954.37 4990.09 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
13. GNAS ENSG00000087460 1859.48 4747.81 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
14. RPL31 ENSG00000071082 1785.81 4559.71 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
15. RPL10A ENSG00000198755 1751.03 4470.91 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
16. MDK ENSG00000110492 1678.54 4285.82 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
17. RPL18A ENSG00000105640 1568.33 4004.42 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
18. RPL15 ENSG00000174748 1561.26 3986.37 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
19. HIST1H4C ENSG00000197061 1540.63 3933.69 histone cluster 1 H4 family member c [Source:HGNC Symbol;Acc:HGNC:4787]
20. RPS20 ENSG00000008988 1495.25 3817.82 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
21. RPL37 ENSG00000145592 1457.53 3721.51 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
22. HSP90AB1 ENSG00000096384 1426.29 3641.75 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
23. HNRNPC ENSG00000092199 1420.39 3626.68 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
24. RPS6 ENSG00000137154 1366.76 3489.75 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
25. RPS23 ENSG00000186468 1361.46 3476.22 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
26. RPL5 ENSG00000122406 1350.85 3449.13 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
27. MTRNR2L1 ENSG00000256618 1319.61 3369.36 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
28. HBZ ENSG00000130656 1288.96 3291.10 hemoglobin subunit zeta [Source:HGNC Symbol;Acc:HGNC:4835]
29. RPL34 ENSG00000109475 1255.96 3206.84 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
30. TPT1 ENSG00000133112 1225.90 3130.09 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
31. RPL7A ENSG00000148303, ENSG00000280858 1154.59 2948.01 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
32. PFN1 ENSG00000108518 1152.23 2941.99 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
33. ITM2B ENSG00000136156 1133.37 2893.83 integral membrane protein 2B [Source:HGNC Symbol;Acc:HGNC:6174]
34. UBB ENSG00000170315 1113.92 2844.17 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
35. RPL10 ENSG00000147403 1110.38 2835.13 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
36. MTRNR2L8 ENSG00000255823 1066.18 2722.28 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
37. ITM2C ENSG00000135916 1059.70 2705.73 integral membrane protein 2C [Source:HGNC Symbol;Acc:HGNC:6175]
38. RPS15A ENSG00000134419 1059.11 2704.23 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
39. RPS2 ENSG00000140988 1047.32 2674.12 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
40. RPL13AP20 ENSG00000234498 1016.08 2594.36 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
41. RPS16 ENSG00000105193 984.26 2513.11 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. SPINT2 ENSG00000167642 977.77 2496.54 serine peptidase inhibitor, Kunitz type 2 [Source:HGNC Symbol;Acc:HGNC:11247]
43. RPL23 ENSG00000125691 956.56 2442.38 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
44. COL1A1 ENSG00000108821 947.13 2418.31 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
45. SERF2 ENSG00000140264 936.52 2391.22 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
46. RPL35 ENSG00000136942 931.21 2377.66 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
47. NGFRAP1 NGFRAP1 908.82 2320.49
48. RPL11 ENSG00000142676 905.28 2311.45 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
49. CAPNS1 ENSG00000126247 893.49 2281.35 calpain small subunit 1 [Source:HGNC Symbol;Acc:HGNC:1481]
50. RPS11 ENSG00000142534 886.42 2263.30 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
51. MYL6 ENSG00000092841 869.33 2219.66 myosin light chain 6 [Source:HGNC Symbol;Acc:HGNC:7587]
52. RPS5 ENSG00000083845 868.74 2218.15 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
53. NPHS2 ENSG00000116218 839.86 2144.41 NPHS2, podocin [Source:HGNC Symbol;Acc:HGNC:13394]
54. VIM ENSG00000026025 839.86 2144.41 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
55. COX7A2 ENSG00000112695 836.91 2136.88 cytochrome c oxidase subunit 7A2 [Source:HGNC Symbol;Acc:HGNC:2288]
56. RPLP0 ENSG00000089157 823.95 2103.79 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
57. RPS28 ENSG00000233927 822.18 2099.27 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
58. RPS27A ENSG00000143947 812.16 2073.69 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
59. TMSB4X ENSG00000205542 809.80 2067.66 thymosin beta 4 X-linked [Source:HGNC Symbol;Acc:HGNC:11881]
60. RPS13 ENSG00000110700 788.58 2013.48 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
61. RPL13 ENSG00000167526 766.78 1957.82 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
62. NPM1 ENSG00000181163 761.47 1944.26 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
63. RPS29 ENSG00000213741 729.65 1863.02 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
64. RPS8 ENSG00000142937 717.86 1832.91 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
65. IFITM2 ENSG00000185201 713.73 1822.37 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
66. UBA52 ENSG00000221983 707.84 1807.33 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:HGNC:12458]
67. RPS3A ENSG00000145425 673.07 1718.55 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
68. GAPDH ENSG00000111640 664.82 1697.48 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
69. RPS14 ENSG00000164587 662.46 1691.46 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
70. HNRNPD ENSG00000138668 655.97 1674.89 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
71. COL3A1 ENSG00000168542 647.13 1652.32 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
72. IFITM3 ENSG00000142089 646.54 1650.81 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
73. CFL1 ENSG00000172757 635.35 1622.24 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
74. TOMM6 ENSG00000214736 633.58 1617.72 translocase of outer mitochondrial membrane 6 [Source:HGNC Symbol;Acc:HGNC:34528]
75. FAU ENSG00000149806 621.20 1586.11 FAU, ubiquitin like and ribosomal protein S30 fusion [Source:HGNC Symbol;Acc:HGNC:3597]
76. EIF4G2 ENSG00000110321 607.06 1550.01 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
77. RPL32 ENSG00000144713 604.70 1543.98 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
78. HMGN1 ENSG00000205581 600.57 1533.44 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
79. SPARC ENSG00000113140 594.09 1516.89 secreted protein acidic and cysteine rich [Source:HGNC Symbol;Acc:HGNC:11219]
80. PCBP1 ENSG00000169564 587.61 1500.34 poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8647]
81. RPL30 ENSG00000156482 585.84 1495.83 ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333]
82. PXDN ENSG00000130508 579.95 1480.79 peroxidasin [Source:HGNC Symbol;Acc:HGNC:14966]
83. RPL9 ENSG00000163682 576.41 1471.75 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
84. ANXA2 ENSG00000182718 561.67 1434.11 annexin A2 [Source:HGNC Symbol;Acc:HGNC:537]
85. SRP14 ENSG00000140319 560.50 1431.12 signal recognition particle 14 [Source:HGNC Symbol;Acc:HGNC:11299]
86. MORF4L1 ENSG00000185787 554.01 1414.55 mortality factor 4 like 1 [Source:HGNC Symbol;Acc:HGNC:16989]
87. RPL22 ENSG00000116251 544.58 1390.48 ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:10315]
88. H2AFZ ENSG00000164032 531.03 1355.88 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
89. DLK1 ENSG00000185559 524.54 1339.31 delta like non-canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2907]
90. HMGB1 ENSG00000189403 501.56 1280.63 high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]
91. STMN1 ENSG00000117632 499.20 1274.61 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
92. RPL3 ENSG00000100316 493.90 1261.07 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
93. RPL27A ENSG00000166441 490.95 1253.54 ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329]
94. RPS7 ENSG00000171863 490.36 1252.04 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
95. CD81 ENSG00000110651 485.65 1240.01 CD81 molecule [Source:HGNC Symbol;Acc:HGNC:1701]
96. GPC3 ENSG00000147257 473.86 1209.91 glypican 3 [Source:HGNC Symbol;Acc:HGNC:4451]
97. RPL26 ENSG00000161970 473.86 1209.91 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
98. PGAM1 ENSG00000171314 470.91 1202.37 phosphoglycerate mutase 1 [Source:HGNC Symbol;Acc:HGNC:8888]
99. HNRNPK ENSG00000165119 470.32 1200.87 heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:HGNC:5044]
100. SPOCK2 ENSG00000107742 470.32 1200.87 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [Source:HGNC Symbol;Acc:HGNC:13564]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA