Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice2, section s43.

Sample reads: 391,628. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. RPL41 ENSG00000229117 8711.00 22243.06 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
2. HIST1H4C ENSG00000197061 7565.44 19317.93 histone cluster 1 H4 family member c [Source:HGNC Symbol;Acc:HGNC:4787]
3. RPS27 ENSG00000177954 6973.14 17805.53 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
4. EEF1A1 ENSG00000156508 4516.05 11531.48 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
5. ACTB ENSG00000075624 4457.47 11381.90 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
6. TUBA1B ENSG00000123416 3470.30 8861.22 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
7. ACTG1 ENSG00000184009 2824.84 7213.07 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
8. PTMA ENSG00000187514 2805.31 7163.20 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
9. RPS12 ENSG00000112306 2565.57 6551.04 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
10. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 2260.74 5772.67 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
11. RPL18A ENSG00000105640 2045.95 5224.22 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
12. GNAS ENSG00000087460 2031.84 5188.19 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
13. RPL34 ENSG00000109475 2015.57 5146.65 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
14. RPL31 ENSG00000071082 1940.72 4955.52 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
15. RPS20 ENSG00000008988 1897.33 4844.73 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
16. HNRNPC ENSG00000092199 1888.65 4822.56 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
17. RPL37 ENSG00000145592 1856.10 4739.45 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
18. PPIA ENSG00000196262 1850.68 4725.61 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
19. RPS29 ENSG00000213741 1789.93 4570.49 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
20. RPL5 ENSG00000122406 1733.52 4426.45 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
21. ACTC1 ENSG00000159251 1700.98 4343.36 actin, alpha, cardiac muscle 1 [Source:HGNC Symbol;Acc:HGNC:143]
22. RPL15 ENSG00000174748 1694.47 4326.74 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
23. RPL35 ENSG00000136942 1663.01 4246.40 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
24. RPL10A ENSG00000198755 1608.77 4107.90 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
25. MDK ENSG00000110492 1604.43 4096.82 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
26. HSP90AB1 ENSG00000096384 1581.65 4038.66 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
27. RPL13AP20 ENSG00000234498 1553.44 3966.62 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
28. TPT1 ENSG00000133112 1442.79 3684.08 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
29. RPS15A ENSG00000134419 1409.16 3598.21 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
30. RPS6 ENSG00000137154 1392.89 3556.67 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
31. RPL23 ENSG00000125691 1376.62 3515.12 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
32. RPS23 ENSG00000186468 1301.77 3324.00 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
33. RPS5 ENSG00000083845 1282.24 3274.13 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
34. RPS3A ENSG00000145425 1261.63 3221.50 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
35. PFN1 ENSG00000108518 1236.68 3157.79 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
36. RPL10 ENSG00000147403 1228.00 3135.63 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
37. RPS2 ENSG00000140988 1190.03 3038.68 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
38. MTRNR2L8 ENSG00000255823 1167.25 2980.51 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
39. NNAT ENSG00000053438 1111.93 2839.25 neuronatin [Source:HGNC Symbol;Acc:HGNC:7860]
40. RPS16 ENSG00000105193 1082.64 2764.46 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. MTRNR2L1 ENSG00000256618 1056.60 2697.97 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
42. MYL6 ENSG00000092841 1026.23 2620.42 myosin light chain 6 [Source:HGNC Symbol;Acc:HGNC:7587]
43. RPL7A ENSG00000148303, ENSG00000280858 1022.97 2612.10 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
44. RPS11 ENSG00000142534 978.50 2498.55 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
45. RPS8 ENSG00000142937 954.63 2437.59 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
46. TMSB4X ENSG00000205542 950.29 2426.51 thymosin beta 4 X-linked [Source:HGNC Symbol;Acc:HGNC:11881]
47. HMGB1 ENSG00000189403 930.76 2376.64 high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]
48. UBB ENSG00000170315 916.66 2340.64 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
49. RPL13 ENSG00000167526 913.41 2332.34 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
50. RPLP0 ENSG00000089157 907.98 2318.48 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
51. RPL32 ENSG00000144713 905.81 2312.94 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
52. RPL9 ENSG00000163682 878.69 2243.69 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
53. SERF2 ENSG00000140264 861.34 2199.38 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
54. CFL1 ENSG00000172757 855.91 2185.52 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
55. RPS27A ENSG00000143947 847.23 2163.35 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
56. H2AFZ ENSG00000164032 841.81 2149.52 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
57. EIF4G2 ENSG00000110321 838.56 2141.22 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
58. RPL11 ENSG00000142676 827.71 2113.51 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
59. NPM1 ENSG00000181163 807.10 2060.89 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
60. RPS13 ENSG00000110700 777.81 1986.09 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
61. SFRP1 ENSG00000104332 757.20 1933.47 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
62. RPL30 ENSG00000156482 751.77 1919.60 ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333]
63. VIM ENSG00000026025 744.18 1900.22 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
64. RPL22 ENSG00000116251 735.50 1878.06 ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:10315]
65. STMN1 ENSG00000117632 728.99 1861.44 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
66. HNRNPD ENSG00000138668 722.48 1844.81 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
67. RPS28 ENSG00000233927 711.63 1817.11 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
68. NGFRAP1 NGFRAP1 708.38 1808.81
69. RPL27A ENSG00000166441 704.04 1797.73 ribosomal protein L27a [Source:HGNC Symbol;Acc:HGNC:10329]
70. NUCKS1 ENSG00000069275 702.95 1794.94 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:HGNC Symbol;Acc:HGNC:29923]
71. GAPDH ENSG00000111640 687.77 1756.18 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
72. CAPNS1 ENSG00000126247 675.83 1725.69 calpain small subunit 1 [Source:HGNC Symbol;Acc:HGNC:1481]
73. RPS14 ENSG00000164587 667.16 1703.56 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
74. FAU ENSG00000149806 653.05 1667.53 FAU, ubiquitin like and ribosomal protein S30 fusion [Source:HGNC Symbol;Acc:HGNC:3597]
75. RPS9 ENSG00000170889, ENSG00000274646, ENSG00000274950, ENSG00000278270 644.38 1645.39 ribosomal protein S9 [Source:HGNC Symbol;Acc:HGNC:10442]
76. PGAM1 ENSG00000171314 642.21 1639.85 phosphoglycerate mutase 1 [Source:HGNC Symbol;Acc:HGNC:8888]
77. UBA52 ENSG00000221983 642.21 1639.85 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:HGNC:12458]
78. SRP14 ENSG00000140319 637.87 1628.77 signal recognition particle 14 [Source:HGNC Symbol;Acc:HGNC:11299]
79. COL3A1 ENSG00000168542 633.53 1617.68 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
80. COX7A2 ENSG00000112695 632.44 1614.90 cytochrome c oxidase subunit 7A2 [Source:HGNC Symbol;Acc:HGNC:2288]
81. HMGN1 ENSG00000205581 632.44 1614.90 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
82. IFITM2 ENSG00000185201 630.27 1609.36 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
83. MORF4L1 ENSG00000185787 614.00 1567.81 mortality factor 4 like 1 [Source:HGNC Symbol;Acc:HGNC:16989]
84. RPL39 ENSG00000198918 609.66 1556.73 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
85. HMGA2 ENSG00000149948 591.22 1509.65 high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
86. RPL4 ENSG00000174444 587.97 1501.35 ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:10353]
87. RPS7 ENSG00000171863 576.03 1470.86 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
88. TPM1 ENSG00000140416 576.03 1470.86 tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010]
89. PBX1 ENSG00000185630 573.86 1465.32 PBX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8632]
90. TUBA1A ENSG00000167552 568.44 1451.48 tubulin alpha 1a [Source:HGNC Symbol;Acc:HGNC:20766]
91. PKM ENSG00000067225 561.93 1434.86 pyruvate kinase M1/2 [Source:HGNC Symbol;Acc:HGNC:9021]
92. RPL26 ENSG00000161970 550.00 1404.39 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
93. COL1A1 ENSG00000108821 541.32 1382.23 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
94. MALAT1 ENSG00000251562 540.23 1379.45 metastasis associated lung adenocarcinoma transcript 1 [Source:HGNC Symbol;Acc:HGNC:29665]
95. RPL3 ENSG00000100316 532.64 1360.07 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
96. MARCKSL1 ENSG00000175130 530.47 1354.53 MARCKS like 1 [Source:HGNC Symbol;Acc:HGNC:7142]
97. RPLP1 ENSG00000137818 528.30 1348.98 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
98. TOMM6 ENSG00000214736 520.71 1329.60 translocase of outer mitochondrial membrane 6 [Source:HGNC Symbol;Acc:HGNC:34528]
99. SEPW1 516.37 1318.52 selenoprotein W, 1
100. PXDN ENSG00000130508 514.20 1312.98 peroxidasin [Source:HGNC Symbol;Acc:HGNC:14966]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA