Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice2, section s100.

Sample reads: 391,626. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. RPL41 ENSG00000229117 9689.72 24742.30 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
2. SFRP1 ENSG00000104332 7472.61 19081.00 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
3. EEF1A1 ENSG00000156508 4191.01 10701.57 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
4. ACTB ENSG00000075624 2893.87 7389.38 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
5. COL1A1 ENSG00000108821 2594.27 6624.36 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
6. TUBA1B ENSG00000123416 2516.72 6426.34 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
7. COL3A1 ENSG00000168542 2347.53 5994.32 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
8. RPS12 ENSG00000112306 2220.63 5670.29 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
9. PTMA ENSG00000187514 2210.06 5643.30 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
10. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 2125.46 5427.27 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
11. ACTG1 ENSG00000184009 2044.39 5220.26 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
12. GNAS ENSG00000087460 2016.20 5148.28 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
13. PPIA ENSG00000196262 1903.40 4860.25 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
14. RPS2 ENSG00000140988 1864.63 4761.25 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
15. MAB21L3 ENSG00000173212 1776.51 4536.24 mab-21 like 3 [Source:HGNC Symbol;Acc:HGNC:26787]
16. RPL5 ENSG00000122406 1776.51 4536.24 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
17. LINC00504 ENSG00000248360 1698.96 4338.22 long intergenic non-protein coding RNA 504 [Source:HGNC Symbol;Acc:HGNC:43555]
18. RPL15 ENSG00000174748 1695.44 4329.24 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
19. KCNQ1OT1 ENSG00000269821 1667.24 4257.23 KCNQ1 opposite strand/antisense transcript 1 [Source:HGNC Symbol;Acc:HGNC:6295]
20. RPS27 ENSG00000177954 1540.34 3933.19 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
21. RPS6 ENSG00000137154 1483.95 3789.20 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
22. MTRNR2L8 ENSG00000255823 1480.42 3780.19 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
23. MTRNR2L2 ENSG00000271043 1469.85 3753.20 MT-RNR2 like 2 [Source:HGNC Symbol;Acc:HGNC:37156]
24. RPL10A ENSG00000198755 1413.45 3609.19 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
25. RPL31 ENSG00000071082 1233.69 3150.18 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
26. RPL7A ENSG00000148303, ENSG00000280858 1194.91 3051.15 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
27. RPS23 ENSG00000186468 1180.81 3015.15 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
28. MDK ENSG00000110492 1163.19 2970.16 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
29. MALAT1 ENSG00000251562 1138.52 2907.16 metastasis associated lung adenocarcinoma transcript 1 [Source:HGNC Symbol;Acc:HGNC:29665]
30. RPL10 ENSG00000147403 1124.42 2871.16 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
31. RPL11 ENSG00000142676 1096.22 2799.15 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
32. TPT1 ENSG00000133112 1064.49 2718.13 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
33. VIM ENSG00000026025 1046.87 2673.14 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
34. COL1A2 ENSG00000164692 1025.72 2619.13 collagen type I alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2198]
35. HNRNPC ENSG00000092199 1025.72 2619.13 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
36. HSP90AB1 ENSG00000096384 1011.62 2583.13 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
37. RPL37 ENSG00000145592 979.90 2502.13 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
38. EIF4G2 ENSG00000110321 958.75 2448.13 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
39. RPS15A ENSG00000134419 948.18 2421.14 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
40. NPM1 ENSG00000181163 919.98 2349.13 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
41. RPS20 ENSG00000008988 902.35 2304.11 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
42. RPLP0 ENSG00000089157 891.78 2277.12 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
43. MTRNR2L1 ENSG00000256618 888.25 2268.11 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
44. RPL13 ENSG00000167526 860.06 2196.13 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
45. RPL35 ENSG00000136942 845.96 2160.12 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
46. HMGN1 ENSG00000205581 835.38 2133.11 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
47. NGFRAP1 NGFRAP1 824.81 2106.12
48. RPL18A ENSG00000105640 824.81 2106.12 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
49. RPS16 ENSG00000105193 817.76 2088.12 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. HIST1H4C ENSG00000197061 807.18 2061.10 histone cluster 1 H4 family member c [Source:HGNC Symbol;Acc:HGNC:4787]
51. GAPDH ENSG00000111640 789.56 2016.11 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
52. RPL23 ENSG00000125691 789.56 2016.11 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
53. SRP14 ENSG00000140319 778.98 1989.09 signal recognition particle 14 [Source:HGNC Symbol;Acc:HGNC:11299]
54. RPL34 ENSG00000109475 775.46 1980.10 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
55. LOC729348 768.41 1962.10 uncharacterized LOC729348
56. RPL13AP20 ENSG00000234498 757.84 1935.11 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
57. NREP ENSG00000134986 733.16 1872.09 neuronal regeneration related protein [Source:HGNC Symbol;Acc:HGNC:16834]
58. IFITM3 ENSG00000142089 729.64 1863.11 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
59. RPS27A ENSG00000143947 729.64 1863.11 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
60. TMSB10 ENSG00000034510 701.44 1791.10 thymosin beta 10 [Source:HGNC Symbol;Acc:HGNC:11879]
61. ITM2C ENSG00000135916 690.86 1764.08 integral membrane protein 2C [Source:HGNC Symbol;Acc:HGNC:6175]
62. RPS11 ENSG00000142534 690.86 1764.08 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
63. RPS13 ENSG00000110700 690.86 1764.08 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
64. UBB ENSG00000170315 687.34 1755.09 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
65. RPS3A ENSG00000145425 673.24 1719.09 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
66. RPS28 ENSG00000233927 659.14 1683.09 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
67. CBX3 ENSG00000122565 645.04 1647.08 chromobox 3 [Source:HGNC Symbol;Acc:HGNC:1553]
68. CFL1 ENSG00000172757 645.04 1647.08 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
69. PFN1 ENSG00000108518 645.04 1647.08 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
70. RPL6 ENSG00000089009 645.04 1647.08 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
71. TPM1 ENSG00000140416 641.52 1638.09 tropomyosin 1 [Source:HGNC Symbol;Acc:HGNC:12010]
72. RPS29 ENSG00000213741 637.99 1629.08 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
73. HMGB1 ENSG00000189403 634.47 1620.09 high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]
74. RPS8 ENSG00000142937 634.47 1620.09 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
75. MYL6 ENSG00000092841 630.94 1611.08 myosin light chain 6 [Source:HGNC Symbol;Acc:HGNC:7587]
76. RPS5 ENSG00000083845 620.37 1584.09 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
77. STMN1 ENSG00000117632 616.84 1575.08 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
78. HNRNPD ENSG00000138668 606.27 1548.09 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
79. IFITM2 ENSG00000185201 602.74 1539.07 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
80. HNRNPK ENSG00000165119 595.69 1521.07 heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:HGNC:5044]
81. PTN ENSG00000105894 595.69 1521.07 pleiotrophin [Source:HGNC Symbol;Acc:HGNC:9630]
82. H2AFZ ENSG00000164032 592.17 1512.08 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
83. RPL30 ENSG00000156482 581.59 1485.07 ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333]
84. RPL3 ENSG00000100316 556.92 1422.07 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
85. SRSF2 ENSG00000161547 553.40 1413.08 serine and arginine rich splicing factor 2 [Source:HGNC Symbol;Acc:HGNC:10783]
86. SERF2 ENSG00000140264 542.82 1386.07 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
87. TUBA1A ENSG00000167552 539.30 1377.08 tubulin alpha 1a [Source:HGNC Symbol;Acc:HGNC:20766]
88. ID2 ENSG00000115738 525.20 1341.08 inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]
89. HNRNPA1 ENSG00000135486 518.15 1323.07 heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
90. MARCKS ENSG00000277443 518.15 1323.07 myristoylated alanine rich protein kinase C substrate [Source:HGNC Symbol;Acc:HGNC:6759]
91. PCBP1 ENSG00000169564 514.62 1314.06 poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8647]
92. CAPNS1 ENSG00000126247 511.10 1305.07 calpain small subunit 1 [Source:HGNC Symbol;Acc:HGNC:1481]
93. UGDH-AS1 ENSG00000249348 507.57 1296.06 UGDH antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40601]
94. RPS25 ENSG00000118181, ENSG00000280831 500.52 1278.06 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
95. ITM2B ENSG00000136156 493.47 1260.06 integral membrane protein 2B [Source:HGNC Symbol;Acc:HGNC:6174]
96. ZFP36L1 ENSG00000185650 493.47 1260.06 ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]
97. RPL9 ENSG00000163682 486.42 1242.05 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
98. PXDN ENSG00000130508 479.38 1224.08 peroxidasin [Source:HGNC Symbol;Acc:HGNC:14966]
99. TMSB4X ENSG00000205542 479.38 1224.08 thymosin beta 4 X-linked [Source:HGNC Symbol;Acc:HGNC:11881]
100. FAU ENSG00000149806 475.85 1215.06 FAU, ubiquitin like and ribosomal protein S30 fusion [Source:HGNC Symbol;Acc:HGNC:3597]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA