Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice1, section s60.

Sample reads: 391,633. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. PTMA ENSG00000187514 9216.50 23533.51 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
2. RPL41 ENSG00000229117 3954.13 10096.52 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
3. EEF1A1 ENSG00000156508 3335.99 8518.15 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
4. SFRP1 ENSG00000104332 2508.54 6405.33 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
5. RPL5 ENSG00000122406 2387.52 6096.32 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
6. RPS20 ENSG00000008988 2122.61 5419.90 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
7. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 1998.33 5102.56 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
8. ACTB ENSG00000075624 1923.10 4910.47 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
9. TUBA1B ENSG00000123416 1900.21 4852.02 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
10. ACTG1 ENSG00000184009 1798.82 4593.13 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
11. RPL15 ENSG00000174748 1723.60 4401.06 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
12. MDK ENSG00000110492 1658.19 4234.04 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
13. RPS6 ENSG00000137154 1602.59 4092.07 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
14. COL3A1 ENSG00000168542 1576.42 4025.25 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
15. PPIA ENSG00000196262 1566.61 4000.20 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
16. GAPDH ENSG00000111640 1511.01 3858.23 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
17. NGFRAP1 NGFRAP1 1304.96 3332.10
18. RPS5 ENSG00000083845 1304.96 3332.10 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
19. RPL37 ENSG00000145592 1288.61 3290.35 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
20. RPL34 ENSG00000109475 1285.34 3282.00 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
21. RPL18A ENSG00000105640 1255.90 3206.83 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
22. RPL23 ENSG00000125691 1246.09 3181.78 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
23. RPL9 ENSG00000163682 1200.30 3064.86 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
24. RPS23 ENSG00000186468 1170.87 2989.71 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
25. MTRNR2L8 ENSG00000255823 1144.70 2922.89 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
26. RPS15A ENSG00000134419 1121.81 2864.44 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
27. STMN1 ENSG00000117632 1115.27 2847.74 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
28. RPS11 ENSG00000142534 1092.37 2789.27 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
29. RPL10A ENSG00000198755 1085.83 2772.57 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
30. RPS27 ENSG00000177954 1072.75 2739.17 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
31. RPL14 ENSG00000188846 1059.67 2705.77 ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:10305]
32. RPS27A ENSG00000143947 1056.40 2697.42 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
33. RPL31 ENSG00000071082 1053.13 2689.07 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
34. RPS12 ENSG00000112306 1053.13 2689.07 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
35. HSP90AB1 ENSG00000096384 1046.59 2672.37 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
36. RPLP1 ENSG00000137818 1046.59 2672.37 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
37. RPS8 ENSG00000142937 1046.59 2672.37 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
38. GNAS ENSG00000087460 1036.77 2647.30 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
39. RPL37A ENSG00000197756 1010.61 2580.50 ribosomal protein L37a [Source:HGNC Symbol;Acc:HGNC:10348]
40. TPT1 ENSG00000133112 951.74 2430.18 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
41. RPL13 ENSG00000167526 932.12 2380.09 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
42. RPL7A ENSG00000148303, ENSG00000280858 912.49 2329.96 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
43. NPM1 ENSG00000181163 905.95 2313.26 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
44. MTRNR2L1 ENSG00000256618 876.52 2238.12 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
45. RPL13AP20 ENSG00000234498 866.70 2213.04 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
46. RPL10 ENSG00000147403 834.00 2129.54 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
47. COL1A1 ENSG00000108821 798.02 2037.67 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
48. HNRNPC ENSG00000092199 794.75 2029.32 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
49. RPS14 ENSG00000164587 794.75 2029.32 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
50. HNRNPH1 ENSG00000169045, ENSG00000284254 791.48 2020.97 heterogeneous nuclear ribonucleoprotein H1 [Source:HGNC Symbol;Acc:HGNC:5041]
51. RPS16 ENSG00000105193 788.21 2012.62 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. VIM ENSG00000026025 771.86 1970.88 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
53. RPS2 ENSG00000140988 768.59 1962.53 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
54. RPS7 ENSG00000171863 755.50 1929.10 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
55. RPS3A ENSG00000145425 729.34 1862.30 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
56. UBB ENSG00000170315 709.72 1812.21 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
57. HNRNPD ENSG00000138668 703.18 1795.51 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
58. RPL6 ENSG00000089009 699.90 1787.13 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
59. RPL26 ENSG00000161970 680.28 1737.03 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
60. RPL35 ENSG00000136942 677.01 1728.68 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
61. CFL1 ENSG00000172757 670.47 1711.99 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
62. RPS13 ENSG00000110700 663.93 1695.29 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
63. RPS25 ENSG00000118181, ENSG00000280831 660.66 1686.94 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
64. HMGN1 ENSG00000205581 657.39 1678.59 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
65. RPS28 ENSG00000233927 657.39 1678.59 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
66. SRSF3 ENSG00000112081 657.39 1678.59 serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785]
67. RPS29 ENSG00000213741 650.85 1661.89 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
68. RPL11 ENSG00000142676 637.76 1628.46 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
69. COL1A2 ENSG00000164692 631.22 1611.76 collagen type I alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2198]
70. SERF2 ENSG00000140264 621.41 1586.72 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
71. RPS21 ENSG00000171858 614.87 1570.02 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
72. H2AFZ ENSG00000164032 611.60 1561.67 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
73. IFITM2 ENSG00000185201 605.06 1544.97 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
74. IFITM3 ENSG00000142089 601.79 1536.62 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
75. KCTD12 ENSG00000178695 601.79 1536.62 potassium channel tetramerization domain containing 12 [Source:HGNC Symbol;Acc:HGNC:14678]
76. RPL29 ENSG00000162244 598.52 1528.27 ribosomal protein L29 [Source:HGNC Symbol;Acc:HGNC:10331]
77. RPL35A ENSG00000182899 598.52 1528.27 ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345]
78. DDX17 ENSG00000100201 591.98 1511.57 DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
79. SPARC ENSG00000113140 591.98 1511.57 secreted protein acidic and cysteine rich [Source:HGNC Symbol;Acc:HGNC:11219]
80. EIF4G2 ENSG00000110321 588.70 1503.19 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
81. RAN ENSG00000132341 588.70 1503.19 RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9846]
82. RPL32 ENSG00000144713 578.89 1478.14 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
83. RPL3 ENSG00000100316 569.08 1453.10 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
84. RPS15 ENSG00000115268 569.08 1453.10 ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:10388]
85. HSPA8 ENSG00000109971 565.81 1444.75 heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
86. RPLP0 ENSG00000089157 546.19 1394.65 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
87. PFN1 ENSG00000108518 542.92 1386.30 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
88. RBM3 ENSG00000102317 542.92 1386.30 RNA binding motif protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
89. RPL39 ENSG00000198918 529.83 1352.87 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
90. RPS14P3 516.75 1319.48 ribosomal protein S14 pseudogene 3
91. GPC3 ENSG00000147257 510.21 1302.78 glypican 3 [Source:HGNC Symbol;Acc:HGNC:4451]
92. HMGA2 ENSG00000149948 497.13 1269.38 high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
93. HNRNPA1 ENSG00000135486 490.59 1252.68 heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
94. MARCKSL1 ENSG00000175130 490.59 1252.68 MARCKS like 1 [Source:HGNC Symbol;Acc:HGNC:7142]
95. MORF4L1 ENSG00000185787 487.32 1244.33 mortality factor 4 like 1 [Source:HGNC Symbol;Acc:HGNC:16989]
96. H3F3B ENSG00000132475 480.78 1227.63 H3 histone family member 3B [Source:HGNC Symbol;Acc:HGNC:4765]
97. RPL38 ENSG00000172809 477.50 1219.25 ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC:10349]
98. YBX1 ENSG00000065978 474.23 1210.90 Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014]
99. RPL7 ENSG00000147604 467.69 1194.20 ribosomal protein L7 [Source:HGNC Symbol;Acc:HGNC:10363]
100. HMGB1 ENSG00000189403 464.42 1185.86 high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA